G48323


Basic Information

Item Value
gene id G48323
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 17986281 ~ 17986571 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU57164
tgccaacgtacagagaaatgcatccaatttaATTGGGAGgtacttcatcatgcagcaagacaatgacccaaaacacactgccaacacaacaaaggacctCATCaagggaaaaagtggaaggttttagacttgccaagtcaatcaccagaccttaaaccaattgagcagcatttcccctcctgaagaggagactgacgGGAGAAACCacccaaaacaaacatcaaCTGAAataagctgtggtacaagcctgggaaagcatcacaaaagaagaatgcaacagtttggtgatgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57164 True 291 lncRNA 0.44 1 17986281 17986571

Neighbor

gene id symbol gene type direction distance location
trmt61a trmt61a,LOC107582491,LOC107678528,LOC107698149,LOC107589545 coding upstream 3536 17971726 ~ 17982745 (+)
mark3a mark3,mark3a coding upstream 20975 17943331 ~ 17965306 (+)
LOC113541463 eif5,LOC107708426,LOC107721218,LOC107582488,LOC107589547 coding upstream 46445 17932252 ~ 17939836 (+)
tnfaip2b LOC108263219 coding upstream 59993 17921135 ~ 17926288 (+)
LOC113544778 NA coding upstream 66944 17903229 ~ 17919337 (+)
LOC113543388 apopt1 coding downstream 25244 18011815 ~ 18015780 (+)
klc1a klc1 coding downstream 31824 18018395 ~ 18046867 (+)
fignl1 fignl1 coding downstream 69555 18056126 ~ 18059166 (+)
mocos mocos coding downstream 154118 18140689 ~ 18149740 (+)
anxa11a anxa11,LOC108263209,LOC106613295 coding downstream 171892 18158463 ~ 18173187 (+)
G48305 NA non-coding upstream 44959 17902052 ~ 17941322 (+)
G48302 NA non-coding upstream 88825 17896322 ~ 17897456 (+)
G48209 gbf1 non-coding upstream 217345 17726419 ~ 17768936 (+)
G48133 NA non-coding upstream 383127 17601874 ~ 17603154 (+)
G48095 NA non-coding upstream 518133 17467948 ~ 17468148 (+)
LOC113541886 NA non-coding downstream 95046 18081617 ~ 18084799 (+)
G48478 NA non-coding downstream 187729 18174300 ~ 18174499 (+)
G48494 NA non-coding downstream 235497 18222068 ~ 18222547 (+)
G48571 c3h10orf11,cunh10orf11,c13h10orf11,LOC103041229,LOC107690203,LOC107678567 non-coding downstream 474102 18460673 ~ 18462196 (+)
G48482 NA non-coding downstream 686740 18673311 ~ 18701906 (+)
LOC113541016 ankrd2 other upstream 1009252 16973682 ~ 16977029 (+)
marveld1 marveld1,LOC107665576,LOC107664302,LOC107736855,LOC107564681 other upstream 1518931 16465939 ~ 16467350 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other upstream 1677383 16285122 ~ 16308898 (+)
lrrc18a lrrc18,LOC108263378 other upstream 1748739 16234514 ~ 16237542 (+)
cxcl12a cxcl12 other upstream 1852279 16124627 ~ 16134002 (+)
dlg5a dlg5 other downstream 190170 18176741 ~ 18222050 (+)
zgc:110319 LOC108444338,LOC107678512,LOC108263312 other downstream 915867 18902438 ~ 18912195 (+)
selenou1a fam213a,LOC107690162,LOC107733773,LOC107582522 other downstream 1040397 19026968 ~ 19036644 (+)
grxcr1b LOC108263619 other downstream 1227636 19214207 ~ 19217276 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other downstream 1269493 19256064 ~ 19262088 (+)

Expression


Co-expression Network