G48368


Basic Information

Item Value
gene id G48368
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 17987422 ~ 17987631 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU57216
CTTTTTGAGTGCTACAAAAGCCTCAGCAGTTTTGAAATGGCACACATTTCTGCAGTCTACAAACTTTGATTAGTTTAGCACTATAATCATTATGTTAATATAAAAACTGTCCAAACTGAATTAGCAACCTCTCTCTACAGTATATACCTACTCCAGAGCTGAGGTTGTTTTTGAGTCCAGTCTGTCTTGTGGCTTCCACCTGCCAAGCCC

Function

GO: NA

KEGG:

id description
ko00100 Steroid biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU57216 True 210 lncRNA 0.40 1 17987422 17987631

Neighbor

gene id symbol gene type direction distance location
ckba ckb,kcrb,LOC107582489,LOC108263462,LOC108444021,LOC108263301,LOC107698148 coding downstream 16240 17965747 ~ 17971182 (-)
si:dkey-196h17.9 NA coding downstream 53504 17926887 ~ 17933918 (-)
si:dkey-45k15.1 LOC108263217 coding downstream 85103 17896613 ~ 17902319 (-)
ninl LOC108263056 coding downstream 143633 17822585 ~ 17843789 (-)
gbf1 gbf1 coding downstream 206894 17719023 ~ 17780528 (-)
bag5 bag5,LOC107678581 coding upstream 14026 18001657 ~ 18010593 (-)
ttl ttl,LOC107678537,LOC107698152 coding upstream 59794 18047425 ~ 18054897 (-)
ikzf1 ikzf1,LOC107721232,LOC107589539,LOC107708437,LOC107698154 coding upstream 76194 18063825 ~ 18081466 (-)
vwc2 vwc2 coding upstream 120391 18108022 ~ 18122718 (-)
zgc:110045 zgc:110045,LOC108262845,LOC108444131,LOC107582498,LOC107708438,LOC107721227,LOC107678543 coding upstream 140718 18128349 ~ 18158184 (-)
G48271 NA non-coding downstream 168818 17817285 ~ 17818604 (-)
LOC117596895 NA non-coding downstream 185536 17799740 ~ 17801886 (-)
G48254 NA non-coding downstream 221757 17762794 ~ 17765665 (-)
G48250 NA non-coding downstream 260214 17716235 ~ 17727208 (-)
G48248 NA non-coding downstream 277046 17708921 ~ 17710376 (-)
G48411 NA non-coding upstream 50056 18037687 ~ 18046886 (-)
G48419 NA non-coding upstream 96026 18083657 ~ 18084805 (-)
LOC117596862 NA non-coding upstream 99873 18087504 ~ 18091613 (-)
G48476 NA non-coding upstream 179389 18167020 ~ 18173182 (-)
G48938 NA non-coding upstream 856122 18843753 ~ 18844635 (-)
col13a1 col13a1 other downstream 326003 17578178 ~ 17661419 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other downstream 413000 17561404 ~ 17574422 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other downstream 511330 17471187 ~ 17476092 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other downstream 1004693 16979131 ~ 16982729 (-)
zdhhc16a LOC108263271,LOC108443446 other downstream 1531167 16444696 ~ 16456255 (-)
lrmda c3h10orf11,cunh10orf11,c13h10orf11,LOC103041229,LOC107747465,LOC107678567,LOC107708444 other upstream 342737 18330368 ~ 18613521 (-)
G49195 rab11fip5,LOC108263817,LOC107582533,LOC107733767 other upstream 1328856 19316487 ~ 19319733 (-)
atrn atrn,LOC107568639,LOC107693325,LOC107695011 other upstream 1627086 19614717 ~ 19667661 (-)
slc4a11 slc4a11,LOC107695019 other upstream 1728969 19716600 ~ 19768134 (-)
metap1 metap1,LOC107556924 other upstream 2194422 20182053 ~ 20205593 (-)

Expression


Co-expression Network