XLOC_005315 (si:ch211-141o9.10)


Basic Information

Item Value
gene id XLOC_005315
gene name si:ch211-141o9.10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 19272963 ~ 19282120 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010202
AAAAAAAACATGGCCTCCCGAAGAAAAGGCGAGAAGAAAAGAAAGACGGTGTAGCTAACTGAAACAAACAGGCAGCAACACTTGGATGCAGAGCCATCAGATGGCAGCACCAAAGAACAAATGGCATGCAAAAGGAAGATGAAAccacagaaaaaatatataggcgCTCACGTCTCAATTTCAGGAGGAATATGGAAAGCAGTGGAGTCCAGTGTGGCCATGGGAGGTCACGCTTTTGCCCTTTTCTTGGGCTCTCAGCGCTCCTGGACAAGACCAGTCCTTGATTCAAAGGCTGCAGTTAAATTTCAACAAGCCTGTGCAGAACATGGCTTCGATCCAGTACACATCCTGCCACATGGATCTTATTTGATGAACTGCGGTTCTCCTAAAGAAGATGTGTTCAGTAAGAGCCAGGCTATGCTTGTGGATGAGCTGAGTCGCTGCGATGCATTGGGCCTCAGCCAGTTTAACTTTCACCCTGGAGCTGCTATGGACTCCAGCCCTGAGAAATGCATGGAGAAAATCGCCCAAGCTATTAATCATGCACACCAGCAAACCCCTGCTGTCATTACAGTGCTTGAAAACATGAGTGGTCAGGGCAGCACCATCGGTGGGCAGTTCAGTGAACTAAAAGGCATAATCGACCGAGTGCGTGACAAGTCACGGGTCGGGGTGTGTCTGGACACTTGCCATGCTTTTGCTGCAGGCTATGACATTTCACCACCGGGAGGAGTGAACAATATGCTTGATGAATTTGACCGCGTGGTTGGGCTGCATTATTTAAGAGCTGTTCACTTAAACGACTCTAAAGGGAAATTAGGCTCCCACCTGGATCGCCATGAAGACATTGGACATGGCCAGATAGGTATTACAGCTTTCCGAGAAATTGTAAACGAGCCTCGACTGGATAATATCCCTCTGATTCTAGAAACTCCCGGTCGCCAGGGTTTCGAGTATGCTGAACAGATAGAGCTCCTGTACTCCCTTTGTGAAAAAAAGGTGAAGAAATAGACATCTACTAGGTGGATTAAACCTTGTCCTGCATTTTAATCAATTAGATCTCAGTCTTTTTATTGCTATTCAGGTATTTTcgttttattatatacatactacctgacaaaagtattgttctcaatcccagttgtaagagcaacaaataataactagacttctggttgatcatttggaaaagtggcagaaagtacaTTTTGCGGAtgattcatctgttgaactgcatcccaatcatcacaaatactgcagaaaacctgttggaacccgcatggacccaagattctcaaagaaatcagtcatgtACTGCTCATTGCATTAAAAACCACattagagggcaaattcttcagcgaGATATcgatcatacttcagcctccacattaaaggtCCTGCAAGCAAAgagggtcaaggtgctccaggattgaccagcccaatcaccagacattATTGTCATTATTGACAATCACCAgtcattattgagcatgtctggggtaagatggaggaggcattacaAATTAAttcaaagactcttgatgaacactgggagtcctgcaagaaggttttctttgccattccagatgactttattaataagttattggagtcattgcaaagatgtatggatgcagttgcccaagctcatgggagtcaaacacaatataatTCTTTTCCATtgtaccatgactttatattctatactgtacattatttatgttaaataacaagacttttgtctcagcaaagtcagacttcactgtcctaattaagtaatttaaaatcaaggcatgatcatattttatatgGTTACACTAAGcataatctaaaggcctttgcctcatataagccacttctgataccaaatgatcaactagaaggtgtttgttgttcctaaaacttagactTCTGTCTGGTAgtgtactagtattcagcttaaaaatgcaattaaaaaggcTTAAGTAAGCTAATCAGGTTAAGTGAAAGCTGAACAACACTGGTTCATTCTGTGGacaaccaaaaaaataataatttctgaaaggggctaaataatattgacctaaaaatattgtgtttatagTTTTAAAACTTCTTGTATTCCAGCCAGTTTCAtagaaaatgctgtaaaaaaattccATACTCTGAAATATTGTCAAAAGAATAACATTTCAGAAGTGTGCTAATAATTgtgcatgtatatttatataactgtataattGTGTGCTTTAGTTTAATCCTTATACTGgtcaaaatattttgaagagactttcaaaaagggcagcacagtggcgcagtaggtagcctcacagcaagaaggtcgctggttcgagcctcggctgggtcagtgtgcatttctgtgtgagtttgcatgttctccccatgtttgcatggtttaaaagtgtatttcccagggatgggttgcggctggaagtgtaCACACaataatgtgctggataagttggcagttcattgatAACAATTTACTATGGgcagttttaaaacatgttttgacCATGAGAGGGAGCCAAGTACTAGGATTTGTAGAGCAGTGGCTACTGTAAGCCTATTCATTTTACATGCCAGTCTTTTCAGTGCTGTACATGTTTCACTTCTTTTCCCATATATTATTCTTGTCAGTCAGGATTACTACCTTAATGTTGACCATGTTCACCCATCACCCTGGCCCAGTCCCGCTTCAGGTACAGCTGCTGTACCCCACACTTAGCTGGACCACACAAGAACACCACATGCAGTCCTGCAAAAACACTGCCATCTCAACCTATAGAAGTTGTTTTAGACTTTTAAAGTAGCAGCAGGAAGGATGTTTCCAAGTGAGAATTTATACAGGAAGGTAAAGTGCCTCGCAGTGGAATCTGCTATATTTTTTGCCAACCAACAGGAAATATCAGTCAGGGAGTTAATAAACCACAGGGCAAACAAAATAGCATCATGACCACAATCATCAAGAGACCGAGTGAATGTATATTCGTAACCGTGTTTTGACCCTGATGCTCTTTTTGTTGGTTTTGTTCCTGTCTAATTTTTCCATGAGATAAAACATTTGCTAAACATATGGCTCAATAAATGTTTCCAGGTCTCCTCATGTTTTCCATCCCTAATTTTACCTGAATGTAAACAGCTTTGGCATTATTAAAGTTAATTGATAGAGTCTGAGGTATAAACCTCTGAGTTAATTACAACTTGTAATATATACTTTGTTCATATTCAGTATAAAGGAGGTATTGTAAGATACAGTTGAAGACACAAAAATTCTGCCTCCTATATATATTGCAGTGtatatgtataattatttataatgtagttattttgtctttgcagtgcttcttttaatatttatatgcGGGTTTGGATGAAAGCTTCTGCTAAAAGAATAAATGTAATTCAAaggaacttttattattattattatttattttattttatttagttttggaaAGGATATTTCAGTTGAACTTTATGAAGAGCAAACAACTGCGGGCTGTAGG
>TCONS_00010203
CATTCCTTACGTCGGCTATACGAACAATTCGTGCAAAAACAACTGTTAAATCCAGTGTTTTAACGGCACTAACTGAAACACACCGAGCTAACGCGTATGCTTTAGTGGTCCTGCCAATCTCAGGTGTATGTTACTCAGTTAACGTTAGCTAATTTGCTAGCAGAAGATATTAACACATCCTAAACGTGAACCTCagatattttattaaattctCCCTGAAGCCAGAGTCTATTTACGTACGGATCGTAACACAAATCAAAAGGAAAAAAAACATGGCCTCCCGAAGAAAAGGCGAGAAGAAAAGAAAGACGGTGTAGCTAACTGAAACAAACAGGCAGCAACACTTGGATGCAGAGCCATCAGATGGCAGCACCAAAGAACAAATGGCATGCAAAAGGAAGATGAAAccacagaaaaaatatataggcgCTCACGTCTCAATTTCAGGAGGAATATGGAAAGCAGTGGAGTCCAGTGTGGCCATGGGAGGTCACGCTTTTGCCCTTTTCTTGGGCTCTCAGCGCTCCTGGACAAGACCAGTCCTTGATTCAAAGGCTGCAGTTAAATTTCAACAAGCCTGTGCAGAACATGGCTTCGATCCAGTACACATCCTGCCACATGGATCTTATTTGATGAACTGCGGTTCTCCTAAAGAAGATGTGTTCAGTAAGAGCCAGGCTATGCTTGTGGATGAGCTGAGTCGCTGCGATGCATTGGGCCTCAGCCAGTTTAACTTTCACCCTGGAGCTGCTATGGACTCCAGCCCTGAGAAATGCATGGAGAAAATCGCCCAAGCTATTAATCATGCACACCAGCAAACCCCTGCTGTCATTACAGTGCTTGAAAACATGAGTGGTCAGGGCAGCACCATCGGTGGGCAGTTCAGTGAACTAAAAGGCATAATCGACCGAGTGCGTGACAAGTCACGGGTCGGGGTGTGTCTGGACACTTGCCATGCTTTTGCTGCAGGCTATGACATTTCACCACCGGGAGGAGTGAACAATATGCTTGATGAATTTGACCGCGTGGTTGGGCTGCATTATTTAAGAGCTGTTCACTTAAACGACTCTAAAGGGAAATTAGGCTCCCACCTGGATCGCCATGAAGACATTGGACATGGCCAGATAGGTATTACAGCTTTCCGAGAAATTGTAAACGAGCCTCGACTGGATAATATCCCTCTGATTCTAGAAACTCCCGGTCGCCAGGGTTTCGAGTATGCTGAACAGATAGAGCTCCTGTACTCCCTTTGTGAAAAAAAGGTGAAGAAATAGACATCTACTAGGTGGATTAAACCTTGTCCTGCATTTTAATCAATTAGATCTCAGTCTTTTTATTGCTATTCAGG
>TCONS_00010204
TGCCAATCTCAGGTGTATGTTACTCAGTTAACGTTAGCTAATTTGCTAGCAGAAGATATTAACACATCCTAAACGTGAACCTCagatattttattaaattctCCCTGAAGCCAGAGTCTATTTACGTACGGATCGTAACACAAATCAAAAGGAAAAAAAACATGGCCTCCCGAAGAAAAGGCGAGAAGAAAAGAAAGACGGTGTAGCTAACTGAAACAAACAGGCAGCAACACTTGGATGCAGAGCCATCAGATGGCAGCACCAAAGAACAAATGGCATGCAAAAGGAAGATGAAAccacagaaaaaatatataggcgCTCACGTCTCAATTTCAGGTGAAGatgctttatttttaatgcagTATTTGTTCCAAACACATAACAATTCTAGAAATTTTCCTTAATCAGGAGGAATATGGAAAGCAGTGGAGTCCAGTGTGGCCATGGGAGGTCACGCTTTTGCCCTTTTCTTGGGCTCTCAGCGCTCCTGGACAAGACCAGTCCTTGATTCAAAGGCTGCAGTTAAATTTCAACAAGCCTGTGCAGAACATGGCTTCGATCCAGTACACATCCTGCCACATGGATCTTATTTGATGAACTGCGGTTCTCCTAAAGAAGGTTTGAGCAATGACTGCACTCTCTGTGGTTGTGTCAGTCACCAAAAACTGACTATTTAAAGATGAAGCCACAACgttggcattaaaaaaaacatagctctgTGGATTTAAGCCATATCTAGTCAATAGCTGCATATGAGGCTGTGTCAAATGACTGTGCTTGTAATCCAGATGTGTTCAGTAAGAGCCAGGCTATGCTTGTGGATGAGCTGAGTCGCTGCGATGCATTGGGCCTCAGCCAGTTTAACT

Function

symbol description
si:ch211-141o9.10 Predicted to enable DNA-(apurinic or apyrimidinic site) endonuclease activity and phosphoric diester hydrolase activity. Predicted to be involved in base-excision repair. Predicted to act upstream of or within DNA repair. Predicted to be active in mitochondrion and nucleus.

GO:

id name namespace
GO:0006281 DNA repair biological_process
GO:0006284 base-excision repair biological_process
GO:0005634 nucleus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130603-5 Predicted to enable DNA-(apurinic or apyrimidinic site) endonuclease activity and phosphoric diester hydrolase activity. Predicted to be involved in base-excision repair. Predicted to act upstream of or within DNA repair. Predicted to be active in mitochondrion and nucleus.

Ensembl:

ensembl_id ENSDARG00000077900

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010202 False 3509 mRNA 0.39 7 19272963 19279103
TCONS_00010203 False 1348 mRNA 0.45 8 19275387 19282120
TCONS_00010204 True 866 lncRNA 0.42 2 19278390 19282009

Neighbor

gene id symbol gene type direction distance location
XLOC_005314 cdc42ep1a coding downstream 22109 19240610 ~ 19250854 (-)
XLOC_005313 zc3h7bb coding downstream 87098 19158832 ~ 19185865 (-)
XLOC_005312 tefa coding downstream 119786 19144833 ~ 19153177 (-)
XLOC_005311 aco2 coding downstream 153787 19106571 ~ 19119176 (-)
XLOC_005310 csdc2a coding downstream 169473 19099264 ~ 19103490 (-)
XLOC_005316 maff coding upstream 58666 19340786 ~ 19346678 (-)
XLOC_005317 shisa9a coding upstream 510161 19792281 ~ 19865585 (-)
XLOC_005318 NA coding upstream 774851 20056971 ~ 20120711 (-)
XLOC_005319 CR352324.1 coding upstream 907049 20189169 ~ 20189286 (-)
XLOC_005320 rhbdf1b coding upstream 945275 20227395 ~ 20303438 (-)
XLOC_005303 AL772266.1 non-coding downstream 534434 18738413 ~ 18738529 (-)
XLOC_005298 NA non-coding downstream 818556 18453207 ~ 18454407 (-)
XLOC_005295 NA non-coding downstream 1045233 18224534 ~ 18227730 (-)
XLOC_005291 NA non-coding downstream 1545423 17721801 ~ 17727540 (-)
XLOC_005289 dre-mir-2192 non-coding downstream 1566062 17706792 ~ 17706901 (-)
XLOC_005321 NA non-coding upstream 1032875 20314995 ~ 20334709 (-)
XLOC_005327 SLC16A6 non-coding upstream 1293520 20575640 ~ 20584439 (-)
XLOC_005332 CR753823.1 non-coding upstream 2287663 21569783 ~ 21569899 (-)

Expression


Co-expression Network