zgc:110319 (LOC108444338,LOC107678512,LOC108263312)


Basic Information

Item Value
gene id zgc:110319
gene name LOC108444338,LOC107678512,LOC108263312
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18902438 ~ 18912195 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU57821
taTACAAGTTCTCATTTACTTTAATTCAGCACACCCATGGTTTTTACCCTACATTGTATATAATTTAAGATAGGATTTAAAGATAGGACTAAATAATTTCATGCTGAATAGAACTGTGAATAATGTAAATGCCTGAATTATCCGCTAAATGTCACAAGGCAAATATAATTCTGGTGTAGCTTGAAGTGTGTTGCAATCTATACACATTTGACAAGCCTCAAAAGCCTGTCTGTTATTCTGCTTTAAGTGctttattattgtaaatatcaCTTTGAACCTGTAAAGCTTTGTATGTTCTACCCATGTTCACCTGGGTCAAGTATGGTGCCTTGTGATCCAGGGTGTGTTGCAACATCACATTTAGTGTTCTGGCTTTGGgatcaccatgaccctgaccagaataacgCTGTTATTGAAGatgagtgaatcagtgtgtaTTTTGTCAGGTGGTAGGACTTATGACTCTTCACAGATTGGATATCTTTTGAAAACCTGGGTGTTGGTGGCAGTTAAGAAGCCAGAATGCAGCTATtcttttacacattattaacaGGAGTGCAGTCTTTTGCTGGCTTTTCTTCAGGTTATACGAAATACAccagaaaaatgaaacattaagaGGGATGGTGAAAatttattgttactgttacaCTCTAAGTTTGTTGCACTTTATAGAAGTGACAGATTAAACC
>XM_026937020.2
TTACAGGATAATCCATCTCCTGTACTACTGAATTAGGTGGATAAATTGAATCATACAGCCAAACCGACAGCTACAAAACAAGACAGGTCAGGACCTGAACGACGGGTCCACGCCCCACAATCACTTCAGAATGGAGCACCGCCTGTGTGTCAGTCATTAAGGACCCCTGATGAGAAATGTTAGATAACTAACGTTGGGTCCTAAATATCAAAACAGTCGACATGGCGGCGTCTTTGAGGCTGACAGTCCTGAGGCTCTTACGGCTGCAGGAGTCCTCAAGTTCAGTTAGATTTTCAGTGAAAGATAGAAGTCAGTGCCGCTCCCTGTGGTCAGTCCAAAAGCACAGCATACAAGCTCAACAGTCACAGAACAAACCATTCTCAGGAAGATGGCTGTCCGTTTTCACAGAAGACACACCAAACCCCAGGAGTTTAAAGTTCCTTCCTGGGAAGCCTGTGCTGGGAACGGGAACTCTAGACTTCCCAACTTCAAGTTCTGCAGAGTGTTCTTCTTTAGCCAGGAAACTTTTTCAGGTTGAAGGAgtgaaaagtgtgttttttggcCCTGATTTCATCACACTTACAAAGATGGATGATGATGTTGAGTGGGCAGACATTAAAAGGCATGCGATTGAGATCATCGCAAAGTTCTTTGAAAGTGGTGAACCTGTAACAACAGGAGTAACACATCCAGAGAGCAATGTGTCAGAGGAGGATGATGAGATTGTCTCAATGATTAAAGAGCTTTTAGACACTCGAATCAGGCCTACCGTACAGGAGGATGGTGGTGACGTCATCTTTAAGGGCTTTGAGGATGGCACAGTGAAGCTGAAGCTTGTTGGCTCTTGCACAGGCTGTCCCAGTTCCACGGTTACTCTGAAAAACGGCATTCAGAACATGCTCCGGTTCTACATTCCAGAGGTGGATGATGTTGAACAGGTGGAGGATGAACTGGATGAAATCAACATGAAGGTGTTTTCAGACCTGGAGAAAAAATTAGAAGACTCATAGCTATGAGCCCAGTCCTTTGATGACCTGCAGAGTTTGAGCATATAGAGGAAGACCAAGACCATTGCCCAGTGGCCATTGTACAGTTGAAATAGTATGCTgacctcttaaaaaaaaaaaaaaaaaaaacagatttgtctTCACTGGTCGCAGTAGCAGTGTATCTGTAGACTACCCAGGAACACCAGGCGTGAGGCGAGTacacatcctggatgggacgccagtccatcacagagcatcatgtgcgcgcacacacatgttcacacactcgctcacacttTTGGTGCAATTTAGAGTGAATGAACAAAAagctatataataatatacagtacaccaAAACTTAATAATAACgaatattaaaataaaggttataaaatatgcatttaaaaaaatataacaaaagtcaaatgtgtttttctttttttttttttttaaacagtgctaTACAAGTTCTCATTTACTTTAATTCAGCACACCCATGGTTTTTACCCTACATTGTATATAATTTAAGATAGGATTTAAAGATAGGACTAAATAATTTCATGCTGAATAGAACTGTGAATAATGTAAATGCCTGAATTATCCGCTAAATGTCACAAGGCAAATATAATTCTGGTGTAGCTTGAAGTGTGTTGCAATCTATACACATTTGACAAGCCTCAAAAGCCTGTCTGTTATTCTGCTTTAAGTGctttattattgtaaatatcaCTTTGAACCTGTAAAGCTTTGTATGTTCTACCCATGTTCACCTGGGTCAAGTATGGTGCCTTGTGATCCAGGGTGTGTTGCAACATCACATTTAGTGTTCTGGCTTTGGgatcaccatgaccctgaccagaataacgCTGTTATTGAAGatgagtgaatcagtgtgtaTTTTGTCAGGTGGTAGGACTTATGACTCTTCACAGATTGGATATCTTTTGAAAACCTGGGTGTTGGTGGCAGTTAAGAAGCCAGAATGCAGCTATtcttttacacattattaacaGGAGTGCAGTCTTTTGCTGGCTTTTCTTCAGGTTATACGAAATACAccagaaaaatgaaacattaagaGGGATGGTGAAAatttattgttactgttacaCTCTAAGTTTGTTGCACTTTATAGAAGTGACAGATTAAACCCAAACTATTAGTCTGATA

Function

NR:

description
NFU1 iron-sulfur cluster scaffold homolog, mitochondrial-like

GO:

id name namespace
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0005737 cytoplasm cellular_component
GO:0005506 iron ion binding molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function

KEGG:

id description
K22074 NFU1, HIRIP5; NFU1 iron-sulfur cluster scaffold homolog, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
TU57821 False 692 lncRNA 0.36 1 18911486 18912177
XM_026937020.2 True 2159 mRNA 0.41 10 18902438 18912195

Neighbor

gene id symbol gene type direction distance location
eif4e1c if4e,LOC108444323,LOC107690176,LOC107747456,LOC107582514 coding upstream 7040 18891221 ~ 18895398 (+)
tet1 tet1 coding upstream 19007 18852702 ~ 18883431 (+)
LOC113538988 LOC108263544 coding upstream 202759 18695720 ~ 18699679 (+)
ifit8 LOC108263543 coding upstream 210660 18688477 ~ 18691778 (+)
comtd1 LOC108444215 coding upstream 215827 18683496 ~ 18686611 (+)
ccar1 ccar1,LOC107690173,LOC107582549,LOC107708455,LOC107747452 coding downstream 1387 18913582 ~ 18933062 (+)
stox1 stox1 coding downstream 27570 18939765 ~ 18956226 (+)
si:ch211-198a12.6 si:ch211-198a12.6,LOC108263519,LOC108444387,LOC103030417,LOC107589522,LOC107747450,LOC107678580,LOC107690167 coding downstream 46189 18958384 ~ 18963875 (+)
LOC113538004 LOC108263518,LOC108262933,LOC105007542 coding downstream 56299 18968494 ~ 18973206 (+)
LOC117596455 LOC108262933,LOC105007542 coding downstream 61442 18973637 ~ 18976601 (+)
G48690 vdac2,LOC107376051,LOC107090363,LOC103476817,LOC108444242 non-coding upstream 191143 18708032 ~ 18711295 (+)
G48482 NA non-coding upstream 200532 18673311 ~ 18701906 (+)
G48571 c3h10orf11,cunh10orf11,c13h10orf11,LOC103041229,LOC107690203,LOC107678567 non-coding upstream 440242 18460673 ~ 18462196 (+)
G48494 NA non-coding upstream 679891 18222068 ~ 18222547 (+)
G48478 NA non-coding upstream 727939 18174300 ~ 18174499 (+)
G48908 NA non-coding downstream 55211 18967406 ~ 18967777 (+)
G48911 LOC108263518,LOC108262933 non-coding downstream 58603 18970798 ~ 18974710 (+)
LOC117596836 LOC107678534,LOC108263526,LOC107570529 non-coding downstream 101996 19014191 ~ 19015574 (+)
G49104 dcaf10,LOC107582526,LOC107733687,LOC107708468 non-coding downstream 290035 19202230 ~ 19203687 (+)
G49146 loxl3,LOC108263239,LOC102779520 non-coding downstream 354350 19266545 ~ 19267589 (+)
dlg5a dlg5 other upstream 680388 18176741 ~ 18222050 (+)
LOC113541016 ankrd2 other upstream 1925409 16973682 ~ 16977029 (+)
marveld1 marveld1,LOC107665576,LOC107664302,LOC107736855,LOC107564681 other upstream 2435088 16465939 ~ 16467350 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other upstream 2593540 16285122 ~ 16308898 (+)
lrrc18a lrrc18,LOC108263378 other upstream 2664896 16234514 ~ 16237542 (+)
selenou1a fam213a,LOC107690162,LOC107733773,LOC107582522 other downstream 114773 19026968 ~ 19036644 (+)
grxcr1b LOC108263619 other downstream 302012 19214207 ~ 19217276 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other downstream 343869 19256064 ~ 19262088 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other downstream 429155 19341350 ~ 19356098 (+)
pprc1 LOC108263826,LOC108421584 other downstream 1470151 20382346 ~ 20392601 (+)

Expression


Co-expression Network