G48911 (LOC108263518,LOC108262933)


Basic Information

Item Value
gene id G48911
gene name LOC108263518,LOC108262933
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18970798 ~ 18974710 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU57836
CTAATTCTTACTGGAAACCCCGTTTCATACATAGCACCTGACAGCTTGAACTCATTACATAAATTACAGAGATTAGTTCTCGTGGACATTGGCCTGCTGTCTTTAAATGTGCAGTTCAACAATCTCACCAAGCTTCAGGAACTAAAAGCTGGAAGTAACAAGATTCAAACAATTGCTCTTCCACCATTCATGATCAACTTTAAAGACTTCTGCGTACTGGACCTGCATGCAAATAACATATCCAGAATAAAAGTAAATCACAC

Function

NR:

description
TLR4-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57836 True 263 lncRNA 0.38 2 18970798 18974710

Neighbor

gene id symbol gene type direction distance location
si:ch211-198a12.6 si:ch211-198a12.6,LOC108263519,LOC108444387,LOC103030417,LOC107589522,LOC107747450,LOC107678580,LOC107690167 coding upstream 6923 18958384 ~ 18963875 (+)
stox1 stox1 coding upstream 14572 18939765 ~ 18956226 (+)
ccar1 ccar1,LOC107690173,LOC107582549,LOC107708455,LOC107747452 coding upstream 37736 18913582 ~ 18933062 (+)
eif4e1c if4e,LOC108444323,LOC107690176,LOC107747456,LOC107582514 coding upstream 75400 18891221 ~ 18895398 (+)
tet1 tet1 coding upstream 87367 18852702 ~ 18883431 (+)
ftr14l LOC108263523,LOC108441770 coding downstream 2524 18977234 ~ 18981316 (+)
zgc:154058 zgc:154058,LOC108263524,LOC108441772,LOC102793226,LOC103041715,LOC107733751,LOC107582519,LOC107690163,LOC107570530,LOC107708463,LOC106613076 coding downstream 8396 18983106 ~ 19010647 (+)
pdzd7a pdzd7,LOC107690160,LOC107570534,LOC107678494 coding downstream 71306 19046016 ~ 19065023 (+)
cpxm1a cpxm1 coding downstream 215563 19190273 ~ 19201133 (+)
si:dkey-33c12.4 LOC108263338 coding downstream 262646 19237356 ~ 19243873 (+)
G48908 NA non-coding upstream 3021 18967406 ~ 18967777 (+)
G48690 vdac2,LOC107376051,LOC107090363,LOC103476817,LOC108444242 non-coding upstream 259503 18708032 ~ 18711295 (+)
G48482 NA non-coding upstream 268892 18673311 ~ 18701906 (+)
G48571 c3h10orf11,cunh10orf11,c13h10orf11,LOC103041229,LOC107690203,LOC107678567 non-coding upstream 508602 18460673 ~ 18462196 (+)
G48494 NA non-coding upstream 748251 18222068 ~ 18222547 (+)
LOC117596836 LOC107678534,LOC108263526,LOC107570529 non-coding downstream 39481 19014191 ~ 19015574 (+)
G49104 dcaf10,LOC107582526,LOC107733687,LOC107708468 non-coding downstream 227520 19202230 ~ 19203687 (+)
G49146 loxl3,LOC108263239,LOC102779520 non-coding downstream 291835 19266545 ~ 19267589 (+)
G49157 NA non-coding downstream 320372 19295082 ~ 19295293 (+)
G49214 NA non-coding downstream 425941 19400651 ~ 19400883 (+)
zgc:110319 LOC108444338,LOC107678512,LOC108263312 other upstream 58603 18902438 ~ 18912195 (+)
dlg5a dlg5 other upstream 748748 18176741 ~ 18222050 (+)
LOC113541016 ankrd2 other upstream 1993769 16973682 ~ 16977029 (+)
marveld1 marveld1,LOC107665576,LOC107664302,LOC107736855,LOC107564681 other upstream 2503448 16465939 ~ 16467350 (+)
arhgap22 arhgap22,LOC108263673,LOC108443345,LOC107668831,LOC107588697 other upstream 2661900 16285122 ~ 16308898 (+)
selenou1a fam213a,LOC107690162,LOC107733773,LOC107582522 other downstream 52258 19026968 ~ 19036644 (+)
grxcr1b LOC108263619 other downstream 239497 19214207 ~ 19217276 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other downstream 281354 19256064 ~ 19262088 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other downstream 366640 19341350 ~ 19356098 (+)
pprc1 LOC108263826,LOC108421584 other downstream 1407636 20382346 ~ 20392601 (+)

Expression


Co-expression Network