G48938


Basic Information

Item Value
gene id G48938
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18843753 ~ 18844635 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU57866
attttttacagagttcctccattttcacaggctcaaaagtaatgggacaattgactgataagcagtttcatggccagctgtggcctgtttcctccttatatcatgataaattaaggagataaaaggtctggaggtgattccaagtgttgaatttgcatttggtagctgttcatgggaactctcaatatgccgtccaaagaggtgttgatgcaagtgaaggaggccatcattaggctgaaaaaccaaaacagacctatcagagagatagcagaaactttaggagggccaaatcaacaatttggtacattcttaaaaagaaggaatgcactggtgagctcagcaacaccaaaaggcctgggagaccacagaaaacaactaaagtggatgattgcagaattcttttcttattgaagaacaaccccttcacaacatctagccaagtcaggaacactctggaggaggtaggcctatcattgtcaaagtctacaatcaagagccaccttcataaatgtaaatacagacggtttacctcaagatgcatacctctggtaacactcaagaacacaaaggccagattagactttgctaaaaaacctctaaaaaaaagcctgaccagttctgatgcaagattaacttgtaccagaatgatgggaagagaaaagtatggagaaggaaaggaagggctcatgatccaaagcataccacatcatccgtcaaacatgtggaggcagtgttatggtatgggcatgtttggctgccaatggaactgggtcactggggtttattgataatgtgactgttgatagaagtagcaggatgaattctgaagtgtacagagctatactttctgctcagattcagtcaaatgctgcaaaactgatag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU57866 True 883 lncRNA 0.41 1 18843753 18844635

Neighbor

gene id symbol gene type direction distance location
alox5a alox5,alox5a,LOC107747471,LOC107582511,LOC107690200,LOC107678516,LOC107708393 coding downstream 5956 18831551 ~ 18837797 (-)
washc2c fam21c coding downstream 15431 18810075 ~ 18828322 (-)
zfand4 zfand4 coding downstream 36156 18788701 ~ 18807597 (-)
march8 march8,LOC107095557 coding downstream 57290 18716883 ~ 18786463 (-)
vdac2 vdac2,LOC108444242,LOC107582506,LOC107747461,LOC107690181 coding downstream 132478 18700916 ~ 18711275 (-)
slc25a16 slc25a16,LOC107678603,LOC107708451,LOC107747470 coding upstream 517 18845152 ~ 18852107 (-)
si:dkey-228d14.5 LOC108262905 coding upstream 53528 18898163 ~ 18903520 (-)
mat1a mat1a,LOC108263526,LOC107678534,LOC107582520,LOC107708460,LOC107733750,LOC105911600 coding upstream 167346 19011981 ~ 19018909 (-)
sfxn3 LOC108263463,LOC108441766,LOC107678536,LOC107708462,LOC107582521,LOC107570532,LOC107733760 coding upstream 192357 19036992 ~ 19044321 (-)
lzts2a lzts2 coding upstream 220398 19065033 ~ 19114569 (-)
G48476 NA non-coding downstream 670571 18167020 ~ 18173182 (-)
LOC117596862 NA non-coding downstream 752140 18087504 ~ 18091613 (-)
G48419 NA non-coding downstream 758948 18083657 ~ 18084805 (-)
G48411 NA non-coding downstream 796867 18037687 ~ 18046886 (-)
G48368 NA non-coding downstream 856122 17987422 ~ 17987631 (-)
G48940 NA non-coding upstream 8878 18853513 ~ 18853713 (-)
G48947 NA non-coding upstream 45928 18890563 ~ 18890812 (-)
G48954 NA non-coding upstream 83547 18928182 ~ 18929502 (-)
G48970 NA non-coding upstream 112522 18957157 ~ 18957459 (-)
G48975 NA non-coding upstream 124956 18969591 ~ 18969796 (-)
lrmda c3h10orf11,cunh10orf11,c13h10orf11,LOC103041229,LOC107747465,LOC107678567,LOC107708444 other downstream 230232 18330368 ~ 18613521 (-)
col13a1 col13a1 other downstream 1182334 17578178 ~ 17661419 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other downstream 1269331 17561404 ~ 17574422 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other downstream 1367661 17471187 ~ 17476092 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other downstream 1861024 16979131 ~ 16982729 (-)
G49195 rab11fip5,LOC108263817,LOC107582533,LOC107733767 other upstream 471852 19316487 ~ 19319733 (-)
atrn atrn,LOC107568639,LOC107693325,LOC107695011 other upstream 770082 19614717 ~ 19667661 (-)
slc4a11 slc4a11,LOC107695019 other upstream 871965 19716600 ~ 19768134 (-)
metap1 metap1,LOC107556924 other upstream 1337418 20182053 ~ 20205593 (-)
atp10d atp10d,LOC107556926 other upstream 1380274 20224909 ~ 20256520 (-)

Expression


Co-expression Network