G48947


Basic Information

Item Value
gene id G48947
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 18890563 ~ 18890812 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU57878
AGCTCAGTTGGTAGAGCAGGGGCCTCTTGATTTTAGGATTGTGGGTTTGTGCCCCACGCTGGGTGCTGACCCCAGCCACTAGAAGTGCCCAGGCTAGTACATTcacagtgccagtcccaagcctggataaatggGGAGGGTTCTGTCAGAAAGGGCATCTGGTATAAAAATCTGTGCTGAATCAGTATGTAGACAATGGAAAGTGATgtgctgtggcaacccctaacaggagcagctgaaagaagaacaa

Function

GO:

id name namespace
GO:0046982 protein heterodimerization activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
ko05203 Viral carcinogenesis
ko05322 Systemic lupus erythematosus
ko05034 Alcoholism

RNA

RNA id representative length rna type GC content exon number start site end site
TU57878 True 250 lncRNA 0.50 1 18890563 18890812

Neighbor

gene id symbol gene type direction distance location
slc25a16 slc25a16,LOC107678603,LOC107708451,LOC107747470 coding downstream 38456 18845152 ~ 18852107 (-)
alox5a alox5,alox5a,LOC107747471,LOC107582511,LOC107690200,LOC107678516,LOC107708393 coding downstream 52766 18831551 ~ 18837797 (-)
washc2c fam21c coding downstream 62241 18810075 ~ 18828322 (-)
zfand4 zfand4 coding downstream 82966 18788701 ~ 18807597 (-)
march8 march8,LOC107095557 coding downstream 104100 18716883 ~ 18786463 (-)
si:dkey-228d14.5 LOC108262905 coding upstream 7351 18898163 ~ 18903520 (-)
mat1a mat1a,LOC108263526,LOC107678534,LOC107582520,LOC107708460,LOC107733750,LOC105911600 coding upstream 121169 19011981 ~ 19018909 (-)
sfxn3 LOC108263463,LOC108441766,LOC107678536,LOC107708462,LOC107582521,LOC107570532,LOC107733760 coding upstream 146180 19036992 ~ 19044321 (-)
lzts2a lzts2 coding upstream 174221 19065033 ~ 19114569 (-)
sema4ga LOC108263187,LOC108441763 coding upstream 247683 19138495 ~ 19171153 (-)
G48940 NA non-coding downstream 36850 18853513 ~ 18853713 (-)
G48938 NA non-coding downstream 45928 18843753 ~ 18844635 (-)
G48476 NA non-coding downstream 717381 18167020 ~ 18173182 (-)
LOC117596862 NA non-coding downstream 798950 18087504 ~ 18091613 (-)
G48419 NA non-coding downstream 805758 18083657 ~ 18084805 (-)
G48954 NA non-coding upstream 37370 18928182 ~ 18929502 (-)
G48970 NA non-coding upstream 66345 18957157 ~ 18957459 (-)
G48975 NA non-coding upstream 78779 18969591 ~ 18969796 (-)
G49053 NA non-coding upstream 161715 19052527 ~ 19052751 (-)
G49108 NA non-coding upstream 299515 19190327 ~ 19190615 (-)
lrmda c3h10orf11,cunh10orf11,c13h10orf11,LOC103041229,LOC107747465,LOC107678567,LOC107708444 other downstream 277042 18330368 ~ 18613521 (-)
col13a1 col13a1 other downstream 1229144 17578178 ~ 17661419 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other downstream 1316141 17561404 ~ 17574422 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other downstream 1414471 17471187 ~ 17476092 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other downstream 1907834 16979131 ~ 16982729 (-)
G49195 rab11fip5,LOC108263817,LOC107582533,LOC107733767 other upstream 425675 19316487 ~ 19319733 (-)
atrn atrn,LOC107568639,LOC107693325,LOC107695011 other upstream 723905 19614717 ~ 19667661 (-)
slc4a11 slc4a11,LOC107695019 other upstream 825788 19716600 ~ 19768134 (-)
metap1 metap1,LOC107556924 other upstream 1291241 20182053 ~ 20205593 (-)
atp10d atp10d,LOC107556926 other upstream 1334097 20224909 ~ 20256520 (-)

Expression


Co-expression Network