G49157


Basic Information

Item Value
gene id G49157
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19295082 ~ 19295293 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU58126
gcacatggtcagcaacaatattcaaatatgctgtggcattcaagcgatgattgattggcaTTAACTGGCCCAAAGTGTGTCAAGAaatcattccccacaccattacaccacctccaccagcctggactgttgacaaaAAGCATTGTGGGTCCAcagattcatgctgttggcaccaaattctgatcttaccatctgtgtgcctcagcagaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58126 True 212 lncRNA 0.45 1 19295082 19295293

Neighbor

gene id symbol gene type direction distance location
mrps26 mrps26,LOC107678578 coding upstream 40728 19252850 ~ 19254354 (+)
si:dkey-33c12.3 LOC108263340 coding upstream 44660 19247018 ~ 19250422 (+)
si:dkey-33c12.4 LOC108263338 coding upstream 51209 19237356 ~ 19243873 (+)
cpxm1a cpxm1 coding upstream 93949 19190273 ~ 19201133 (+)
pdzd7a pdzd7,LOC107690160,LOC107570534,LOC107678494 coding upstream 230059 19046016 ~ 19065023 (+)
rab11fip5a rab11fip5,LOC108263817 coding downstream 23532 19318825 ~ 19339637 (+)
cdc25b cdc25b,LOC108417292,LOC104960468 coding downstream 107639 19402932 ~ 19410091 (+)
ap5s1 ap5s1 coding downstream 117378 19412671 ~ 19426321 (+)
gfra4a gfra4,gfra4a,LOC107693311,LOC107568637,LOC107695017,LOC107733662 coding downstream 221028 19516321 ~ 19604187 (+)
ky LOC108263466 coding downstream 479454 19774747 ~ 19786571 (+)
G49146 loxl3,LOC108263239,LOC102779520 non-coding upstream 27493 19266545 ~ 19267589 (+)
G49104 dcaf10,LOC107582526,LOC107733687,LOC107708468 non-coding upstream 91395 19202230 ~ 19203687 (+)
LOC117596836 LOC107678534,LOC108263526,LOC107570529 non-coding upstream 279508 19014191 ~ 19015574 (+)
G48911 LOC108263518,LOC108262933 non-coding upstream 320372 18970798 ~ 18974710 (+)
G48908 NA non-coding upstream 327305 18967406 ~ 18967777 (+)
G49214 NA non-coding downstream 105358 19400651 ~ 19400883 (+)
G49316 NA non-coding downstream 319424 19614717 ~ 19617317 (+)
G49522 NA non-coding downstream 617528 19912821 ~ 19954595 (+)
G49517 NA non-coding downstream 637749 19933042 ~ 19943075 (+)
G49518 NA non-coding downstream 677294 19972587 ~ 19999686 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other upstream 32994 19256064 ~ 19262088 (+)
grxcr1b LOC108263619 other upstream 77806 19214207 ~ 19217276 (+)
selenou1a fam213a,LOC107690162,LOC107733773,LOC107582522 other upstream 258438 19026968 ~ 19036644 (+)
zgc:110319 LOC108444338,LOC107678512,LOC108263312 other upstream 382887 18902438 ~ 18912195 (+)
dlg5a dlg5 other upstream 1073032 18176741 ~ 18222050 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other downstream 46057 19341350 ~ 19356098 (+)
pprc1 LOC108263826,LOC108421584 other downstream 1087053 20382346 ~ 20392601 (+)
G49862 NA other downstream 1279680 20574973 ~ 20575479 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other downstream 1730440 21025733 ~ 21118964 (+)
wu:fj16a03 NA other downstream 2725029 22020322 ~ 22023811 (+)

Expression


Co-expression Network