G49184


Basic Information

Item Value
gene id G49184
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19251593 ~ 19251863 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU58155
GCCTAGTGTTGTGTCATTCGCAAATGAGTCAGTTCTTTGAGCTGGGTCTTTGAGTTGAACACTGAGAGTCGAATGGAAAACATGCCCTGCGTCTCAATTCGCCTACTATCcgtcctaaatagtatccgagattagacttagtgtgtcccaaatcgtagtatgttgaaatgagtatcccaaaGGTACCCGGATGCTCTATTATTTCCGGTAGATTTTCGAAGTGTGGAtccgtggacactttttcagctagTATTGACCACAACTCCTTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58155 True 271 lncRNA 0.44 1 19251593 19251863

Neighbor

gene id symbol gene type direction distance location
alms1 alms1 coding downstream 15928 19222426 ~ 19235665 (-)
zgc:123321 yipf7 coding downstream 31990 19217614 ~ 19219603 (-)
wdr32 dcaf10,wdr32,LOC107708468,LOC107678556,LOC107733687,LOC107582526 coding downstream 37432 19203112 ~ 19214161 (-)
pomk pomk coding downstream 39564 19210279 ~ 19212029 (-)
slf2 LOC108263189 coding downstream 65610 19173240 ~ 19185983 (-)
loxl3b loxl3b,LOC108263239,LOC108441751,LOC107690148,LOC107708481,LOC107678544 coding upstream 9947 19261810 ~ 19281829 (-)
pank2 pank2,LOC107690147,LOC107733768,LOC107582531 coding upstream 31233 19283096 ~ 19286041 (-)
mavs NA coding upstream 35245 19287108 ~ 19294701 (-)
LOC113540998 LOC108262906 coding upstream 49342 19301205 ~ 19302542 (-)
emx1 emx1,LOC108263581,LOC108441775,LOC103045183,LOC107567848,LOC107678523,LOC107733702,LOC107718448 coding upstream 105752 19357615 ~ 19362980 (-)
G49108 NA non-coding downstream 60978 19190327 ~ 19190615 (-)
G49053 NA non-coding downstream 198842 19052527 ~ 19052751 (-)
G48975 NA non-coding downstream 281797 18969591 ~ 18969796 (-)
G48970 NA non-coding downstream 294134 18957157 ~ 18957459 (-)
G48954 NA non-coding downstream 322091 18928182 ~ 18929502 (-)
G49215 NA non-coding upstream 148801 19400664 ~ 19400863 (-)
G49232 NA non-coding upstream 175883 19427746 ~ 19428725 (-)
G49481 NA non-coding upstream 436729 19688592 ~ 19688877 (-)
G49484 NA non-coding upstream 462302 19714165 ~ 19715420 (-)
G49584 LOC108263592 non-coding upstream 643835 19895698 ~ 19970294 (-)
lrmda c3h10orf11,cunh10orf11,c13h10orf11,LOC103041229,LOC107747465,LOC107678567,LOC107708444 other downstream 638072 18330368 ~ 18613521 (-)
col13a1 col13a1 other downstream 1590174 17578178 ~ 17661419 (-)
LOC113538666 LOC108263686,LOC108442385,LOC107699307,LOC107586507,LOC107708387 other downstream 1677171 17561404 ~ 17574422 (-)
cisd1 cisd1,LOC108263303,LOC108443718,LOC105902329,LOC107549159,LOC107747252,LOC107665600 other downstream 1775501 17471187 ~ 17476092 (-)
morn4 morn4,LOC107747296,LOC107719210,LOC107702749 other downstream 2268864 16979131 ~ 16982729 (-)
G49195 rab11fip5,LOC108263817,LOC107582533,LOC107733767 other upstream 64624 19316487 ~ 19319733 (-)
atrn atrn,LOC107568639,LOC107693325,LOC107695011 other upstream 362854 19614717 ~ 19667661 (-)
slc4a11 slc4a11,LOC107695019 other upstream 464737 19716600 ~ 19768134 (-)
metap1 metap1,LOC107556924 other upstream 930190 20182053 ~ 20205593 (-)
atp10d atp10d,LOC107556926 other upstream 973046 20224909 ~ 20256520 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G403189 NA non-coding CI01000286 null 35838 ~ 36059 (+)