G49517


Basic Information

Item Value
gene id G49517
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 19933042 ~ 19943075 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU58539
GGCGGCGAGCGCAGCACTCACAGCGGGGACGCGGTTTGAAATCTGATCcgggctaatttttttttacccccctcctcctcctcctcctcctcctccagagtCCGGGGCTCCAAACTGTTTAGCGGGAGTTGGTGAGTCCAGCAGTTTCACACAGAGGAGCACCCGAGCAGAGTCAGGAGCTCACATCAGGCAGCCCGCGCACCTCCGCCACATTCCCCGCCGGTTAGTGGGACGAGGTGGACTGTGTACTAACTGCGGCTTTCTGCTCAGCTCACACAGCCACACCGGGCGGACAGACGAGCTGAAGTTTATCTGGACTGCCCCGTAAGGAAGAGCTGAACACGGCTGATCTTCAGTGCATCTTGACGGATCCATTGGACTATTCATCTTCACAAAGAAGCAGCTGTGCAACTTCTAGTGATTTCTAATAGCTGAGGATTACTGGCACCAAGAGAGCTTGTCGgGTGGCAAGTGGACAGGGGACACCTGTGTGAGAgtgcttgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggcagcacTACGTTGACATCATGTGTAGGACTGTGGAAGATGTGTGAGTCTGGTGTCCGTGGCGAGGACCCTGGGCCACAACGGACCCTGGCTGGGATGATGGCGCTTTGCCTTCTCCTCTACCTCTCCTCCATCTTCCCATCAGTGCACAGCGCTCACCTGCCCTCAGCACAGCCCACAGGGGAGTAAAGACGTGACGAGAAGAATCGCTGCTCCGCTCTCAATATTTATGATGCAGATGCACACAAAAGAAAGTCATGAGTGAGGGAGTCGTGAGTCAATCAGTATGGCAGTCTGATACCTCAAATACTTGTCTTTTGAACTTCCATTATACTAAGTaaaattttctgtaacactgtTTGTTTCTACTTTCCCCTCTACACTTCCCTGTTcctgtcagttccagtgaaggaggcgtgtctgGTCCTTGCACTCCAGAGCCAACTCTTTTCCTTCTCTATCAAATGCgtctgtagtgtgtgcagtTATTACAGATAAAAAATGGGAAactgagaaatgaacagaaaccTGTTCAgtcaaaactcacttataatagAAGTCTAAGGACAGTTGTTGCTTTCTGTCAGTAGTAGATTCTTTATTATGTGACAGTATAACATGATTTGGAGACTATAACTGTTACACAAACCGTCCTTCgaaagagacagacatgagCCCTACCAAAGCTGTTTTTACTGTATGCCGTTTTATCCAACTTTCCCAGACAGCAGCAAAACAGTACAAAGCTATTCAGATTACTTCCTGTACACATTCTCCAAGGGTTTGTGGTATCCATCAGGCAAAAACCTTTGTGatactttttgtttattttaagctACATTGGCTATATTCTAGTAACACATAAGGATGGTTTTACCGTCTGAAAGAGTAGTCCCGTCTCTGAAAGAAGATACATATTTAGGACATAATATACTAATATCtttgaataaattattcatGAAAGTGTtctacaaaaatgtgttttgaacaGAGGCTTATTGCAACCCCAGCAGCTGCCCTTaaacttccattataagtgagatGTAAGTAAACAGGTTTCTGGTGAACTGTTGAAATTATTATGTGGTAATTGCACATATGCTACAGGTGTGGTAGATAGAAATTAAATTGGAAGACAACACTGGAGAAACATTCGAGACTTCGTTTCTATGAACTATCGAACTGTTTGCATAATACCTAATCAGTTTATATAACATTGAATTGCACATGGAATTACATTGGCACTGCCCTAAATTGCATCATATTGAATCGCTCTCTGATTTACATGTTAATGTATCATTCATATATTAGATCTTTTATCTCAGAGTGAGAGATACACTCCTCCTACGCGCACATAAGCAATATATTCAGAGAagcatttatgaatataataaatcaCCAGTCATTTTAGCAAATCATAATGTACACAGATTTCGTCGGGATAAATACATTTGGATAAATAATGTTGCCACTACGGTTCAGGGTCGATTCCTTGCTGTGTTGTGGACCCCCAAGAGTGCATGTATGCTCATCATCAGTGTAGAGGAATGTCAATAAACTATACATCAGTAAACtatctcttttttcattttagctGCCTGAACTGTGTAATTTGTaggtaaattatataaataataaatacagagcGTATAAGGCACATGAGTGTTAGTAATTGGATTGGTTTATGTTGTTTATCAGTGGACATTGATTAAAAGTTTTTTCAGATTGGttagattttaaataatgagaAGTGATTTAAGGCTTTATCCCAGATTTGAAAGTGACCAATTTATCCATTATCCAAC

Function

GO:

id name namespace
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58539 True 2351 lncRNA 0.42 3 19933042 19943075

Neighbor

gene id symbol gene type direction distance location
ky LOC108263466 coding upstream 146471 19774747 ~ 19786571 (+)
gfra4a gfra4,gfra4a,LOC107693311,LOC107568637,LOC107695017,LOC107733662 coding upstream 328855 19516321 ~ 19604187 (+)
ap5s1 ap5s1 coding upstream 506721 19412671 ~ 19426321 (+)
cdc25b cdc25b,LOC108417292,LOC104960468 coding upstream 522951 19402932 ~ 19410091 (+)
rab11fip5a rab11fip5,LOC108263817 coding upstream 593405 19318825 ~ 19339637 (+)
nsd2 whsc1,LOC105909588 coding downstream 99634 20042709 ~ 20064115 (+)
fam241a c3h4orf32 coding downstream 219383 20162458 ~ 20166918 (+)
LOC113544755 LOC108263479,LOC108421350,LOC103045808,LOC107747568,LOC107666441,LOC107733735,LOC107585225,LOC107695031 coding downstream 229521 20172596 ~ 20181424 (+)
enpep enpep coding downstream 252399 20195474 ~ 20205571 (+)
lamtor3 lamtor3 coding downstream 269385 20212460 ~ 20214679 (+)
G49316 NA non-coding upstream 315725 19614717 ~ 19617317 (+)
G49214 NA non-coding upstream 532159 19400651 ~ 19400883 (+)
G49157 NA non-coding upstream 637749 19295082 ~ 19295293 (+)
G49146 loxl3,LOC108263239,LOC102779520 non-coding upstream 665453 19266545 ~ 19267589 (+)
G49104 dcaf10,LOC107582526,LOC107733687,LOC107708468 non-coding upstream 729355 19202230 ~ 19203687 (+)
G49518 NA non-coding downstream 29512 19972587 ~ 19999686 (+)
G49630 NA non-coding downstream 177973 20121048 ~ 20183193 (+)
G49643 NA non-coding downstream 212826 20155901 ~ 20191144 (+)
G49853 NA non-coding downstream 580741 20523816 ~ 20524049 (+)
G49863 NA non-coding downstream 637726 20580801 ~ 20585500 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other upstream 576944 19341350 ~ 19356098 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other upstream 670954 19256064 ~ 19262088 (+)
grxcr1b LOC108263619 other upstream 715766 19214207 ~ 19217276 (+)
selenou1a fam213a,LOC107690162,LOC107733773,LOC107582522 other upstream 896398 19026968 ~ 19036644 (+)
zgc:110319 LOC108444338,LOC107678512,LOC108263312 other upstream 1020847 18902438 ~ 18912195 (+)
pprc1 LOC108263826,LOC108421584 other downstream 439271 20382346 ~ 20392601 (+)
G49862 NA other downstream 631898 20574973 ~ 20575479 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other downstream 1082658 21025733 ~ 21118964 (+)
wu:fj16a03 NA other downstream 2077247 22020322 ~ 22023811 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other downstream 2542235 22485310 ~ 22552752 (+)

Expression


Co-expression Network