G49605


Basic Information

Item Value
gene id G49605
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20064256 ~ 20064511 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU58688
atttttaaaagttttatttcacCCAAACCTCACAAAAAGCGCCCTGACTCAATTTACTGTGCCTTTTTTAAACTCTGAATAGGTAGATTTTGCAGAGACTCATTTAACATTCTAGCATGTTACATAAACTCAAAAAAATGAGCTAACAAAAATGTGCTAAAAATGTGCTGCTCTATAGTTAAATGCACTCTATattaactataaaaacaatTCAAGGGCTATCCATAGTGTCTTACATTTAACGGTACAactggct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58688 True 256 lncRNA 0.32 1 20064256 20064511

Neighbor

gene id symbol gene type direction distance location
letm1 letm1,LOC107747576 coding downstream 31411 19996869 ~ 20032845 (-)
foxi2 foxi3 coding downstream 219899 19841727 ~ 19844357 (-)
cfd LOC100862744 coding downstream 250390 19810135 ~ 19813866 (-)
c3h20orf194 c3h20orf194 coding downstream 256633 19787744 ~ 19807623 (-)
rpia rpia,LOC107695020,LOC107568642,LOC107671341 coding downstream 350750 19701079 ~ 19713506 (-)
kiaa1109 kiaa1109,si:ch211-233a24.2,LOC107733727 coding upstream 2191 20066702 ~ 20110665 (-)
c9orf72 c3h9orf72,cunh9orf72,zgc:100846,LOC107747573,LOC107556919,LOC107733782,LOC107695028 coding upstream 47199 20111710 ~ 20120717 (-)
lingo2b lingo2,LOC107585221,LOC107666555,LOC107733787,LOC107556920,LOC107747569 coding upstream 63236 20127747 ~ 20150575 (-)
eif4eb eif4e,LOC108263665,LOC103132121,LOC103460523,LOC106937591,LOC107556921,LOC107747571 coding upstream 92633 20157144 ~ 20160544 (-)
rrh rrh coding upstream 141352 20205863 ~ 20209292 (-)
G49606 NA non-coding downstream 38592 20020687 ~ 20025664 (-)
G49584 LOC108263592 non-coding downstream 93962 19895698 ~ 19970294 (-)
G49484 NA non-coding downstream 348836 19714165 ~ 19715420 (-)
G49481 NA non-coding downstream 375379 19688592 ~ 19688877 (-)
G49232 NA non-coding downstream 635531 19427746 ~ 19428725 (-)
G49661 NA non-coding upstream 116567 20181078 ~ 20184289 (-)
G49700 NA non-coding upstream 151142 20215653 ~ 20216430 (-)
G49797 NA non-coding upstream 232607 20297118 ~ 20360451 (-)
LOC113537651 NA non-coding upstream 284899 20349410 ~ 20351476 (-)
G49806 NA non-coding upstream 399382 20463893 ~ 20464950 (-)
slc4a11 slc4a11,LOC107695019 other downstream 296122 19716600 ~ 19768134 (-)
atrn atrn,LOC107568639,LOC107693325,LOC107695011 other downstream 396595 19614717 ~ 19667661 (-)
G49195 rab11fip5,LOC108263817,LOC107582533,LOC107733767 other downstream 744523 19316487 ~ 19319733 (-)
lrmda c3h10orf11,cunh10orf11,c13h10orf11,LOC103041229,LOC107747465,LOC107678567,LOC107708444 other downstream 1450735 18330368 ~ 18613521 (-)
col13a1 col13a1 other downstream 2402837 17578178 ~ 17661419 (-)
metap1 metap1,LOC107556924 other upstream 117542 20182053 ~ 20205593 (-)
atp10d atp10d,LOC107556926 other upstream 160398 20224909 ~ 20256520 (-)
gng2 gbg2,gng2,LOC108239039,LOC106603227 other upstream 293423 20357934 ~ 20369445 (-)
prkceb prkceb,prkce,LOC108263296,LOC108422423,LOC107699301,LOC107727364,LOC107708403 other upstream 1323232 21387743 ~ 21478705 (-)
plekhh2 plekhh2 other upstream 1547152 21611663 ~ 21645512 (-)

Expression


Co-expression Network