G49630


Basic Information

Item Value
gene id G49630
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20121048 ~ 20183193 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU58721
cgcacacacacacacacacacacacacacacacacacacacacacacactccaagcaAAGGGTGGTGGCACTGCGagcaggtcaaaggtcagtgcCTTCCAGTCTGATCAGATCCAAGCTGAGTCCTATGACTGTTCAGatgataaattcataaataaacaaatctccACTTCTCGCCCAATCAGACAGTCCATTACCATGGCCACTCGGCCAATAATCTTCTGCCCAACAGAGAACCACagtgtgattggctgatcagtGACAGGGGCGGAGTGGATGTGTCCTTCACTGGGGAAGGGCTTGTATTCTCACCCGAGCACTCTACATCTGTGACAGGAAGTGAGCACGGCCATTTTCATCGAGTCGACGAGTGAGAATTTCACAACCTGTTTCGGTCACCAGAAGTGTGTGTTCAAACTGGGCAGACCGTTTCCCATCTCGAGTAACAGCTGTCCAACCATCTGGCCATGTCTCATCCTGCCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58721 True 484 lncRNA 0.50 2 20121048 20183193

Neighbor

gene id symbol gene type direction distance location
nsd2 whsc1,LOC105909588 coding upstream 56933 20042709 ~ 20064115 (+)
fgfr3 fgfr3,LOC108263592 coding upstream 150742 19933055 ~ 19970306 (+)
LOC117596472 NA coding upstream 186811 19921155 ~ 19934237 (+)
ky LOC108263466 coding upstream 334477 19774747 ~ 19786571 (+)
gfra4a gfra4,gfra4a,LOC107693311,LOC107568637,LOC107695017,LOC107733662 coding upstream 516861 19516321 ~ 19604187 (+)
enpep enpep coding downstream 12281 20195474 ~ 20205571 (+)
lamtor3 lamtor3 coding downstream 29267 20212460 ~ 20214679 (+)
commd8 commd8,comd8 coding downstream 75543 20258736 ~ 20261786 (+)
oga mgea5,LOC107666422,LOC107585241 coding downstream 212564 20395757 ~ 20407070 (+)
npm3 npm3,LOC108262155,LOC108421616,LOC107569414,LOC107666424,LOC107747554,LOC107667062 coding downstream 224741 20407934 ~ 20413712 (+)
G49518 NA non-coding upstream 121362 19972587 ~ 19999686 (+)
G49522 NA non-coding upstream 166453 19912821 ~ 19954595 (+)
G49517 NA non-coding upstream 177973 19933042 ~ 19943075 (+)
G49316 NA non-coding upstream 503731 19614717 ~ 19617317 (+)
G49214 NA non-coding upstream 720165 19400651 ~ 19400883 (+)
G49853 NA non-coding downstream 340623 20523816 ~ 20524049 (+)
G49863 NA non-coding downstream 397608 20580801 ~ 20585500 (+)
G49864 NA non-coding downstream 402411 20585604 ~ 20589230 (+)
G49857 NA non-coding downstream 436745 20619938 ~ 20716297 (+)
G50140 NA non-coding downstream 767377 20950570 ~ 20950991 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other upstream 764950 19341350 ~ 19356098 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other upstream 858960 19256064 ~ 19262088 (+)
grxcr1b LOC108263619 other upstream 903772 19214207 ~ 19217276 (+)
selenou1a fam213a,LOC107690162,LOC107733773,LOC107582522 other upstream 1084404 19026968 ~ 19036644 (+)
zgc:110319 LOC108444338,LOC107678512,LOC108263312 other upstream 1208853 18902438 ~ 18912195 (+)
pprc1 LOC108263826,LOC108421584 other downstream 199153 20382346 ~ 20392601 (+)
G49862 NA other downstream 391780 20574973 ~ 20575479 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other downstream 842540 21025733 ~ 21118964 (+)
wu:fj16a03 NA other downstream 1837129 22020322 ~ 22023811 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other downstream 2302117 22485310 ~ 22552752 (+)

Expression


Co-expression Network