pprc1 (LOC108263826,LOC108421584)


Basic Information

Item Value
gene id pprc1
gene name LOC108263826,LOC108421584
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20382346 ~ 20392601 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU58889
CACCTTCTATTGAAGTGAAGATTtgtatgaaaaattaaaagaggaaaaaaactgaataacATAAAACTATGTAACGAAaagtcatgatttttttaaatgaagaatttatttaaatgtttaaactaaAGATGTTCAATGCATTTTAAGAATTAAGTTGAACTGCTCTAATGCTGAGGGGATGGATTTACATTGCCGAAAATGTAGCTCAGTCCAAATAAACC
>XM_026945692.2
ACCACGTGTGTCCGGGCCGGCGGCGTGAGTCACGGCGGTTTGATTCACATTTTCACAGAGTGGAGTTGTAAGATGGCGGCTCGCTGGGGAACCGGTGAGGAGATGTTAACAGCCTGTAAACTTGAGTATTTTGCATCAACGACTCTTGACGAGTCGGAAATACTACAGGAAGGTCTGTGCAGTCTGCAGCACAATGGTCTGGACACTGGAGATGCACTTGAAGCCCTGCATGGCTGTTTAGATCCATCCATTCTGTCAATCTTCGAAGACTCTACAAATGGAGAGGTTAAAAGTGGTGTTGATGAAGAAAGTGAGGCAACACTGCTCACAGCTCTCACTGAAATACTTGACAATGTAGATGATGAAAACTTGTCTCCTTTTGACACTCTACCTGACATGGAGCTCTTGCAAGGGCAGAAATGCCATGAGCTCTCACCTAGACATGATGGTGGTGAAGATGGTGCTGCTAGCTTTTCTGAACTTATACAGGACTTGGATATATCATCTGAATTGGACTGGTGCCTTCCCATATCCCTGGAGCAAGATggggagactgtgtctgttacTCTCAGTGATTTGGTCAAGCACATGCATCCGTATGCCATGACTTTGTGTGTAGAAGGGGAGGAGCAGCTCCTGCCTGAAGGAGGAATCATTTTGGAGGTGATGGATaaaggagaacatggagaacccATTCTTGCTATCCCAGACCTAAGCTTTCCCCTATCTCTGGATAGTTTAGAAGACGAACAGAGTGTTCCAGAAAGCAGCCCAGAAAAGGTTACGTGTAAACATGAAGACACTCCATCAGAGATGGCCCTCTCTAAGGTTTCACCGGTCAGGGACAGTGAAGTGGAGAGTGTGAAAATTAAACAGCCAAAGAAAGAGTCACCTGAAAAAAGGcactcaaaaaagaaaaagaaacggAAAACTGAAGAACCCAAACCAGTTGAAGGAAGAGTGTTAAGGAGCACGTCCTCTAATGAGGCGGTTGAGGAACCCAGTAAGGAAGGGGAAgaacaaaagcagaagaaaaaggTTACATTTGCACCTGTGCTTACTGTAGATGAGAATAAGTGTCAAGTTAAATCTTCAGCGGTGAAGACAACTGAGGTACAGGTGCCTAAGGAAATTCCTTCCTCCACCATATCCACCACAGCAAATCCGCCATTAAGTCAAGTCTGTACAGATGGGATGAAATCAAGACACTTGCAGGTCCCTGAGGAAAAAGCCACACCTGATGAATTATCTAGTGATAAATCTAGAGAAACTGCTGTGCCTTCAGAGCAGGAGCCTGGCATCAGCCAGCCAAGTGAACCCAAGCAAAAATCACTCAGTTTACAACAGTACCGTCTTCTTCGCCAGCAGAAGAAACCATCTCCTCTGGAGAAGGTGGGTGATAACAGCACTAAATGGCCTACTTTACCGGAAGCACCCAAGGAACTTCCTCCAATCCCCTGCCTGCCTGACCCCAACCCTAAAGACCCACGTCGTGCAGCCTCCACTCCTGTGAAAAAGGAGTTTGTCCCTGAAATCATGCCCGCCTGGCAGCCAAGAGGCCCTGGAGCACCCCCAACTCCTCAGGCTTTGCTGGCCCCAGCATCAATGTTAGCTGCCTCTAAAAAACCTGTGTCCTGTAAGTCAGTTTCTCCAGCTCCCACGAAACCTGCAGAAAATTTAGCCGTGTCCACAATCTCCTCCACAAAGCCTTATCCCCAGAAACCACCCGTTCCAACTGATATGCCAGAGAACACTATTCCCAACAAGGTATCTCAGGCTGCTAAGCAGGCATCAGCTGACATTACTCTATCACTACCAATGGCCACTACAGTTAGAGAAGCTAAGAATCTCCATGTAGCTGAGCAGGCAATATGTTTACAAAATACCCCCTCTGCTTCTTATCAATTTTCAGTCCCCTCCAAGGATCAAGACAGCTCCCATACTCAGGTTGTGCCTGAAATCACCACAGTCACTACAAAAAATGAAACCTCTAATGCTGCTTCTAATAATCTTAATGCTGCAAGCGTAGCTGAGCAAAAGGTGAAAGATACTGTGCCTAAACCAGCAAAGcccactcagtcagtcagtgctACCAAGCCTCCTGTCAGCTCCCAACGTCATGTTGCACCCATAGCTCTTCAGCCTTTCTCATCCGCTCCAATTCAGGCCAGAATTATGAAGCTGGCAGAGCAGATGAGAATGGCTTCTGCTGCAGTACCTAAAGCAAAGAGCCCTACTGCAGAGCTTATAGAGTCCTTCACCAGTGAAATTGgtATTGAGGCTTCTGacctcaccagccttttggagCGGTTTGAAGAGACTCAGACCAAAGAGGAGCAGAATGTGCCAGAGGTCTGTGGTAGAGCAGCTGCTGTAGGAAACTCCAGTGTGGAGCAGCATGCGGAAAACACTGCGCTCAAAAAAGCTTGCAGTCCTGATCTGGGCAGCACAGCAGGCCTTACTCCACCAGCCACACCTCCTCACCAAATGTGGAAGCCCTTAGCACCAGTTGCATTATTAGGAAAACCAAACAAGTCAGAAATACCCAAATCAACACCAACTAAGGCTATTCAAATAGAACCACTGCCTTTACCTGCAAGCAAGCTCCAATGCAAGCCCCAGACCTCTGTTACTCTTGGACAGATCCAGCCTTTTTCTCTAGACCACGATTACTGTCTCCTTTCCTTCCAGGAACCCTCCAAGAATGAGCTGGGCAATCTCTGGTCTGCCAAGCAGCAACCGAGCGTCATCATAAAGTCTGCAGAGTTGCCCTCTGCAAACAGCAAGGCATCTAGAGAGACTGGATCTAAACTCCCTTCAAACACCACCACTAAAGAAAGCTTTCAGGAAAAGGTCAACTCTCAGCCGCTTGTATGTGAGAGTCAGTCTGAGAGGGAGGCCTTGACCACCACAGGCATTGTGACTCCAGATGCTTCTCCAGATAGGCTGGATTCTGAGAGTTTTCAGGGATATTCTGAATGTTCCCCCAGCCTGTGCCACCAGAAGAGGGGCCGCACACAGAGAAAATACAGGACACGTTTACCCAGCAGGTCTAGATCCACATCAAGCAGTTCTGGATCGTCTGGATCACGCTCGCCACCCAGGAAAAGATATAGGTCTCGCAGCACTTCCAGATCTCCTTCAAGATATCACACCCGTTCCTGCTCCTCATCTCCTCGCCAGCGCAGATACTCCTATTCCAGCTCCAGCTCTGATTCTTGGAGCCGCAGCCGATCTCGGTCCCGATCACATTCTCGGTCTCCCTCTCGCAGGTCTCACCACTGGAACACTCGCAGCTCTATGCAGAGATCTAACTACTGCTATGATGTAAAACATCATAATGAGGAAATTAGAAAATGCAAGGAGAAGGCTATTGAGGAGCGTAGAGTAGTTTATATTGGTCGCATTCATGGAAGCATGACCCGTAAAGAGCTGAGGGAGCGCTTCTCATACTTTGGGGAGATTGAGGAATGCACTGTACACTTTAGAGAGCATGGAGACAACTATGGCTTTGTCACATACTACAACACAAAGGATGCATTTAATGCTATTGAGAATGGAAGCAAGCTACGGCAGCCGAATGAACTTCCATTCGACCTGTGCTTTGGAGGCAGGAGACAGTTTTGTAGGACTAGTTATGCTGATCTGGATTCAAATCGTGACTTTGATCCAGCCCCTGCGAAAGGCAGGGTTAATGCACTAGACTTCGACACTTTACTTAAGCAAGCTCAGAGAAACTTGAAAAGGTAACACTTGAGGAAAAGGGGAAGACGGAAATCATATGTATTACCTCGGTGCTACGCACAAACCTTCCAAGTGCTGCCATTTAGTtaatgtaattttcttttttttcttatttgttttttttttttcttctgcaagCTTACACCTTCTATTGAAGTGAAGATTtgtatgaaaaattaaaagaggaaaaaaactgaataacATAAAACTATGTAACGAAaagtcatgatttttttaaatgaagaatttatttaaatgtttaaactaaAGATGTTCAATGCATTTTAAGAATTAAGTTGAACTGCTCTAATGCTGAGGGGATGGATTTACATTGCCGAAAATGTAGCTCAGTCCAAATAAACCCATACAAGAACTTG

Function

NR:

description
PREDICTED: peroxisome proliferator-activated receptor gamma coactivator-related protein 1-like isoform X1

GO: NA

KEGG:

id description
K17963 PPRC1, PRC; peroxisome proliferator-activated receptor gamma coactivator-related protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU58889 False 221 lncRNA 0.28 1 20392367 20392587
XM_026945692.2 True 4121 mRNA 0.46 14 20382346 20392601

Neighbor

gene id symbol gene type direction distance location
commd8 commd8,comd8 coding upstream 120560 20258736 ~ 20261786 (+)
lamtor3 lamtor3 coding upstream 167667 20212460 ~ 20214679 (+)
enpep enpep coding upstream 176775 20195474 ~ 20205571 (+)
LOC113544755 LOC108263479,LOC108421350,LOC103045808,LOC107747568,LOC107666441,LOC107733735,LOC107585225,LOC107695031 coding upstream 200922 20172596 ~ 20181424 (+)
fam241a c3h4orf32 coding upstream 215428 20162458 ~ 20166918 (+)
oga mgea5,LOC107666422,LOC107585241 coding downstream 3156 20395757 ~ 20407070 (+)
npm3 npm3,LOC108262155,LOC108421616,LOC107569414,LOC107666424,LOC107747554,LOC107667062 coding downstream 15333 20407934 ~ 20413712 (+)
arl3a arl3,LOC107684078,LOC103033567,LOC108263849,LOC107733731,LOC103145158 coding downstream 22720 20415321 ~ 20421371 (+)
zmp:0000000662 LOC108263473 coding downstream 76022 20468623 ~ 20478746 (+)
ube2d3 ube2d3,ube2d2,ube2d2l,UBE2D2,LOC108263550,LOC107585246,LOC106611705,LOC105029919,LOC103039786 coding downstream 93319 20485920 ~ 20496715 (+)
G49643 NA non-coding upstream 191202 20155901 ~ 20191144 (+)
G49630 NA non-coding upstream 199153 20121048 ~ 20183193 (+)
G49518 NA non-coding upstream 382660 19972587 ~ 19999686 (+)
G49522 NA non-coding upstream 427751 19912821 ~ 19954595 (+)
G49517 NA non-coding upstream 439271 19933042 ~ 19943075 (+)
G49853 NA non-coding downstream 131215 20523816 ~ 20524049 (+)
G49863 NA non-coding downstream 188200 20580801 ~ 20585500 (+)
G49864 NA non-coding downstream 193003 20585604 ~ 20589230 (+)
G49857 NA non-coding downstream 227337 20619938 ~ 20716297 (+)
G50140 NA non-coding downstream 557969 20950570 ~ 20950991 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other upstream 1026248 19341350 ~ 19356098 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other upstream 1120258 19256064 ~ 19262088 (+)
grxcr1b LOC108263619 other upstream 1165070 19214207 ~ 19217276 (+)
selenou1a fam213a,LOC107690162,LOC107733773,LOC107582522 other upstream 1345702 19026968 ~ 19036644 (+)
zgc:110319 LOC108444338,LOC107678512,LOC108263312 other upstream 1470151 18902438 ~ 18912195 (+)
G49862 NA other downstream 182372 20574973 ~ 20575479 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other downstream 633132 21025733 ~ 21118964 (+)
wu:fj16a03 NA other downstream 1627721 22020322 ~ 22023811 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other downstream 2092709 22485310 ~ 22552752 (+)
G51271 znf318 other downstream 2391727 22784328 ~ 22786505 (+)

Expression


Co-expression Network