G49836 (zmp:0000000662,LOC108263473,LOC108421699,LOC107747548,LOC107569423,LOC107666523)


Basic Information

Item Value
gene id G49836
gene name zmp:0000000662,LOC108263473,LOC108421699,LOC107747548,LOC107569423,LOC107666523
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20472477 ~ 20473295 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU58979
TGTGCATGACATTGTGATTCTGCAGCGCTGTGAATCCTCCCAGGCAGAACTTGCAGAGATTCAGGAGGCCCAGGGCCAAATAAGAAACCACAAATGTCAAACCCAGCAGCGAGTAAGGACTAGCACAGCACTcagacacacttacacacCTGGTGAGGAGGTAGAGCAGCAGCCCCTCTTGGATGGCAGTGGAGCTGCCAACATTGGAGACAAGCTGAACTCCAAACAGTACAAACCAGAATGCACTGAATAACACAGGTACAGCAAAGCAATGCCAGAGTGACATTCCCACTGCCAACAGCCGGTACAAAT

Function

symbol description
zmp:0000000662 Predicted to enable zinc ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane.

NR:

description
PREDICTED: RING finger protein 145-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU58979 True 312 lncRNA 0.51 2 20472477 20473295

Neighbor

gene id symbol gene type direction distance location
sufu sufu,LOC107666454 coding downstream 11375 20445420 ~ 20461102 (-)
trim8a LOC108263671 coding downstream 30245 20427871 ~ 20442232 (-)
gabra2a gabra2,si:dkey-52k1.6,LOC108262858,LOC107747556,LOC107666515,LOC107569424 coding downstream 128975 20327905 ~ 20343502 (-)
gabrg1 gabrg1,si:dkey-155h10.3,LOC107747559,LOC107667066,LOC107666522,LOC107585224,LOC107569420,LOC107733747 coding downstream 155308 20309844 ~ 20317169 (-)
gabrb1 gabrb1,LOC107666521,LOC107747557,LOC107733746,LOC107585222,LOC107667065 coding downstream 193435 20262035 ~ 20279042 (-)
desi2 desi2,LOC107587845,LOC107747542,LOC107733777,LOC107585270 coding upstream 81198 20554493 ~ 20573783 (-)
zbtb18 zbtb18 coding upstream 146637 20619932 ~ 20629167 (-)
sdccag8 sdccag8,LOC108263444 coding upstream 276377 20749672 ~ 20802069 (-)
dync2li1 dync2li1 coding upstream 382400 20855695 ~ 20865244 (-)
abcg5 abcg5,LOC107747536,LOC107733783 coding upstream 395094 20868389 ~ 20877844 (-)
G49806 NA non-coding downstream 7527 20463893 ~ 20464950 (-)
G49797 NA non-coding downstream 112026 20297118 ~ 20360451 (-)
LOC113537651 NA non-coding downstream 121001 20349410 ~ 20351476 (-)
G49700 NA non-coding downstream 256047 20215653 ~ 20216430 (-)
G49661 NA non-coding downstream 288188 20181078 ~ 20184289 (-)
G49841 LOC108263473 non-coding upstream 4413 20477708 ~ 20478688 (-)
G49941 NA non-coding upstream 26238 20499533 ~ 20500791 (-)
G49942 manba non-coding upstream 27501 20500796 ~ 20502665 (-)
G49943 NA non-coding upstream 30942 20504237 ~ 20504970 (-)
G49944 NA non-coding upstream 32506 20505801 ~ 20506409 (-)
gng2 gbg2,gng2,LOC108239039,LOC106603227 other downstream 103032 20357934 ~ 20369445 (-)
atp10d atp10d,LOC107556926 other downstream 215957 20224909 ~ 20256520 (-)
metap1 metap1,LOC107556924 other downstream 266884 20182053 ~ 20205593 (-)
slc4a11 slc4a11,LOC107695019 other downstream 704343 19716600 ~ 19768134 (-)
atrn atrn,LOC107568639,LOC107693325,LOC107695011 other downstream 804816 19614717 ~ 19667661 (-)
prkceb prkceb,prkce,LOC108263296,LOC108422423,LOC107699301,LOC107727364,LOC107708403 other upstream 914448 21387743 ~ 21478705 (-)
plekhh2 plekhh2 other upstream 1138368 21611663 ~ 21645512 (-)
G50837 NA other upstream 1476560 21949855 ~ 21950189 (-)
LOC113540944 eml4,LOC107586470,LOC107698167 other upstream 1561990 22035285 ~ 22123649 (-)
LOC113541574 LOC108263228 other upstream 2092476 22565771 ~ 22571868 (-)

Expression


Co-expression Network