G49857


Basic Information

Item Value
gene id G49857
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20619938 ~ 20716297 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU59007
TACTTATAATTTATTGCAGTTTgcacacaatttaaaaatttcacCAACAGCACACCAAAAAGTACAAAACTAAACAGCCTCATAATTTACTTCCCTTGAGAAAATGAAACATACTATGATTGTCAAAGCTAACTGTCTAACTCCATAAAAAGAACAATGTGAACATACCAAAATCTCAAAAGGGAAGCAAATACATGTGAAGTCAATCTGCCTCTTTTTCAGAACGCgattgtcctttttttttgacataactttatttttattctctcccACCTCCTACACACTCAGTTTAAattttgttgttcttcttcacACTGGCTGTTTCCAGTTTTCAAGTAAACTAAAGGTTCATCTGTTTTGTGGACATGCTTCATACTCCATTTCACAGCTTCATTGCCAGTGAAcagaagtgaaataaaaatacatccaGTAACTTGCCAGTTCCAGTTCTCCCGCTCTGAGCATCAGTAGGCTGTTAACAGTAGTTTAAGGCGGTCAAGTACGATAGTAGAAGCCAGCATAAAACAAAAGCAGGAAAATAAACTGTCTCAGGAAAACATCCCCCAACTCCACAgttgataattttttttctttcacattttagaGTGCAAAAGGTAAAAGTACCACCGTGCGAAACGGCACGAGGACCACACGCTGTTGGCAAATCTCAACCCTTTTCACTAGCTGTTGCACCAACCTATTATATACTGGGAAGCTCAGGGCCCTTGAGGCCATAGAGGCACGCGAGCTCTCTACTCTcgtcctctcttctcctctcgcTTAAACTTCACTCTAGCTCAAGTGTTAGTGTCCGAGGCTCCAACAGCACTTTTCCAAATTtagcttttcatttcatttttttttttttgttttttttttttattta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59007 True 886 lncRNA 0.38 2 20619938 20716297

Neighbor

gene id symbol gene type direction distance location
adss2 adss,LOC107666526,LOC101478205,LOC102202649,LOC100691320 coding upstream 17890 20573244 ~ 20602048 (+)
dctn1b dctn1,LOC108263710 coding upstream 67344 20522100 ~ 20552594 (+)
LOC113543984 cmlo,LOC103037014,LOC108421773 coding upstream 98664 20517508 ~ 20521274 (+)
slc39a8 LOC108263549 coding upstream 104302 20507217 ~ 20515636 (+)
manba manba coding upstream 113507 20497593 ~ 20506431 (+)
cep170aa cep170 coding downstream 86073 20802370 ~ 20855702 (+)
abcg8 abcg8,LOC107666472 coding downstream 161589 20877886 ~ 20885712 (+)
ppm1ba ppm1b,LOC107733761,LOC107585253,LOC107698745,LOC107747533,LOC107666482 coding downstream 270592 20986889 ~ 20996378 (+)
slc3a1 slc3a1,LOC107585281,LOC107579201 coding downstream 286072 21002369 ~ 21010590 (+)
trnae-cuc_10 NA coding downstream 289153 21005450 ~ 21005519 (+)
G49864 NA non-coding upstream 30708 20585604 ~ 20589230 (+)
G49863 NA non-coding upstream 34438 20580801 ~ 20585500 (+)
G49853 NA non-coding upstream 95889 20523816 ~ 20524049 (+)
G49643 NA non-coding upstream 428794 20155901 ~ 20191144 (+)
G49630 NA non-coding upstream 436745 20121048 ~ 20183193 (+)
G50140 NA non-coding downstream 234273 20950570 ~ 20950991 (+)
G50145 NA non-coding downstream 246965 20963262 ~ 21043534 (+)
G50284 NA non-coding downstream 463309 21179606 ~ 21179811 (+)
G50297 NA non-coding downstream 481980 21198277 ~ 21198508 (+)
G50310 six2,six2a,LOC107666385,LOC107602488,LOC107602487 non-coding downstream 490097 21206394 ~ 21210115 (+)
G49862 NA other upstream 44459 20574973 ~ 20575479 (+)
pprc1 LOC108263826,LOC108421584 other upstream 227337 20382346 ~ 20392601 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other upstream 1263840 19341350 ~ 19356098 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other upstream 1357850 19256064 ~ 19262088 (+)
grxcr1b LOC108263619 other upstream 1402662 19214207 ~ 19217276 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other downstream 309436 21025733 ~ 21118964 (+)
wu:fj16a03 NA other downstream 1304025 22020322 ~ 22023811 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other downstream 1769013 22485310 ~ 22552752 (+)
G51271 znf318 other downstream 2068031 22784328 ~ 22786505 (+)
LOC113540861 LOC108263311 other downstream 2194847 22911144 ~ 22913552 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G682474 NA non-coding CI01180000 null 9151374 ~ 9152150 (+)