G49864


Basic Information

Item Value
gene id G49864
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20585604 ~ 20589230 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU59015
CAAATGATTTGCTGTTAAAAAGTTtcttgtatttcatttttttccccccaatctCATATTTCTAATTCTTTCACCTTACAGCTGATATAGTCTACTTCCAAAACAGTATAACTATGGTATTGGATTTGGATGGACTTATTTCATACTTGTCTGCCTTCATTTGAAAAGCCTTATGCAACAGCTGCATATTGAATGCATCTAGTCAGGCAGTGCTACTTTAACAGTATTACGTTTCCTCCTTTAACTGTACAAAAATGATGAAAGGCCACCTGTTGCCCTGAGGGTGTAGCACATTCTACTTTCCATCTAACAAGATTCACAACATACCAAGgagtatatatttaacatactCCTAGTATGCTGatatacacagacagatgaACCATTTAGTTTTCTCAACAGAATTTTAATACATGGGAGTCAAGTTCCCAAAATCGCCAGCCTCAGGTTTGGTTAACTGTCTAATTTGGAGCTGCTTTCAACTGGAGACTTGACTAACTTATATAtcttttaaatgcattatatgTCTGACAATGTTTGGCTATAAATCTCCTCTCCTTTAAGTCTTACGGTGTTGTCATAAGCTTTACAGAATCCAATTCAACATGGCTGACTCTGCATTGTGCCATTTGGCGGTACCAAAATAGATTTATGTTTATGGCATTGGGCAGgtacccttatccagagcaacttgcatttatcttatttacacaactgagcagttgagggttaagggccttgctccaGGGCCCTgtagtggcagcttggcagtgctgggatttaaacttaaaccttccaatcagtagttcaacatcttaaccactgagctaccagtGGTTATGTAATGtgatataataattatataatactataaGACTTAAGCTACTTACGTTACATATCTACATGGCCATTCTGATATGATTGTCATATATTAACTACTATCACTATGATATTGTTtgacattattaaatattggcTTAAACTTACTTGTTAACAGTCTTTAAGAATCTCAGTAATAGCTCATTAATGTAATATCGCAGCATATTCCAAATGAAAGCTGTGtcatacagtgccttgcataagtattcacccctcttGAAtggaaaagttcagtggGGGTGGATACTTATGCAACACATGGTACATTGACTTAAGTGTAACCTTATGTGCTATAGGCCATTTAGAAAGGCACCCATGAAAGTTAAATCCTTTACAGGACTTTTGTAGGGTTACAAGAATTAATCACCCTGTTTAATACAGCTCTTTTATTGACATGATTGAAATAGGCACTTATAGGCGCTGGACAAATAGGCACTCATAGGTGCAAGACTAAGAAACATTGAGCTAAATACTCCTCTTAACCAGGGGCAGGTCAAAGAAATTCAGCTCAAATATGTATTTTGTTTCTAATTTGTTTCTAACTCTTAAAATCATGCCCGTTATCAACTTGTATTATCTACAACTCATTGAATGCAACTGAATATCGTTCAGTCTTAATATGCAGCAAATACCAATCCTGGCGAACATAATGAATGGACATAACTGTTCAGTTTGTATAGGAAAAGCTTATGTAGTAACTCCATGTTAAACTCAAACGCAAGCTCTTCCAAATCGTAGGTCAGGTGAAGTACCCTGGCAGTAACAATTTGCATGTCACTATACTGCAAAGGATGATCCCAGTTACCTCTGAAAAATCATCTTATATTCTACtgttattcattatatataagTTATTATTCTCGTCATATCGGTTctaaacataaaatacacagtGGGTGCAAATCAGTTTATACGGCAGCATGCTGTGCCAGTGGCTTGTGACAGGTTATTACAGGGATCTGAGTGGTGTGGCTCTGTCAGTGTGGGTGATAAGTTGGCAAGCCTGATACTTATCCCACTACAGCATAAGCTATCTCCCCTCTAGGACCCGTGCTTATCAGTCACAGCTAGCTACTTTTAGCCTGTCAGGTTTGGAATATGGAAGTCAGCCAGCACAGCCTGATGCCCCAATCCAGTGACAGTCATGTGCACCGTAAAGATACAGAACATATAAAAATGTCACAGGTAATTCCTGGAAATCTGGAAATAAGGTTGCTTATTTTAAGTGCTTCTGGAATGTAATTACTTTAGAAAAATCTTATTGAcctgtaattaaataaacaagttATTGATCAGCAGTTTGTTAAACTTGCAAGGTTTTTTATGTCCTTGTAGCAAGGTCCCTGCGACTTTGATATCATTTTCACCGGTTCCTGTTCTTGTTTATGCTTTTGATAGAACTGTTATTAGAACATCTTTATCTTTAATGCACAACAAGCTCTGAGTGTATAGAAGCAGTTCTCAAAATTGCTAGTTCTCTGTAGTTGGCGTGATTCTTAGAACCTGTTTACAGTTCTCAAACTATCAGCCACCAAAGAAACTTtacagattcttttttttttagagagtgTGGTTACAAACAGCTTGGTTAAACTTGCTTTCGAGACGTGAACAGAGCCTTAACAGTCAGACGTAATGTGAATTTCAGTCCGGTACTTTTTCTTCTCTAACACGTGGCATTCACCCCCAGGTTCACATTAGAGGACAAAAAGTTGCTCgtgtcacttgtagtttgtctctcgTGGCTGTGTAGCAACTGCTACTGTTGTGACTTGTAGACATGCACTGTCTTGCATATTTTTGTAAGTTCTGATGAGAAATGGTAGCAGCCAAAATGTATAGCCTGCAGCTAATTAGttaaatacaaatgaaacacAGTGTGAAAAGTGGTTGACTGATTTGCATGTTATGTATAAGGCTTTGTACTAGCTTCGTACAAGgtagcagattagcaaagcaagtaAACtatactagctacatacactcaccataagcaccaatgatctctgctCCTTCTttcaaagctttatttttctttgtaacatcTCTGTAGAtgtttaatgagaggttgtatatgacaggataagacgAAACCACGATTATAAGctttccttccatttttgcatGGCAGaaagtaaatgggaactaactgaAGGTAGGAATTAAAGTTGTGAGTAGGCAACTGAAGAAACATTGGACTTCACACACCACAAGATTGGCACGAGTGGGAAATGTACTGAGAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59015 True 3124 lncRNA 0.38 2 20585604 20589230

Neighbor

gene id symbol gene type direction distance location
dctn1b dctn1,LOC108263710 coding upstream 33010 20522100 ~ 20552594 (+)
LOC113543984 cmlo,LOC103037014,LOC108421773 coding upstream 64330 20517508 ~ 20521274 (+)
slc39a8 LOC108263549 coding upstream 69968 20507217 ~ 20515636 (+)
manba manba coding upstream 79173 20497593 ~ 20506431 (+)
ube2d3 ube2d3,ube2d2,ube2d2l,UBE2D2,LOC108263550,LOC107585246,LOC106611705,LOC105029919,LOC103039786 coding upstream 88889 20485920 ~ 20496715 (+)
akt3a akt3,akt3a,LOC103024575,LOC108422057,LOC107666430,LOC106589689 coding downstream 59654 20648884 ~ 20745327 (+)
cep170aa cep170 coding downstream 213140 20802370 ~ 20855702 (+)
abcg8 abcg8,LOC107666472 coding downstream 288656 20877886 ~ 20885712 (+)
ppm1ba ppm1b,LOC107733761,LOC107585253,LOC107698745,LOC107747533,LOC107666482 coding downstream 397659 20986889 ~ 20996378 (+)
slc3a1 slc3a1,LOC107585281,LOC107579201 coding downstream 413139 21002369 ~ 21010590 (+)
G49863 NA non-coding upstream 104 20580801 ~ 20585500 (+)
G49853 NA non-coding upstream 61555 20523816 ~ 20524049 (+)
G49643 NA non-coding upstream 394460 20155901 ~ 20191144 (+)
G49630 NA non-coding upstream 402411 20121048 ~ 20183193 (+)
G49518 NA non-coding upstream 585918 19972587 ~ 19999686 (+)
G49857 NA non-coding downstream 30708 20619938 ~ 20716297 (+)
G50140 NA non-coding downstream 361340 20950570 ~ 20950991 (+)
G50145 NA non-coding downstream 374032 20963262 ~ 21043534 (+)
G50284 NA non-coding downstream 590376 21179606 ~ 21179811 (+)
G50297 NA non-coding downstream 609047 21198277 ~ 21198508 (+)
G49862 NA other upstream 10125 20574973 ~ 20575479 (+)
pprc1 LOC108263826,LOC108421584 other upstream 193003 20382346 ~ 20392601 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other upstream 1229506 19341350 ~ 19356098 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other upstream 1323516 19256064 ~ 19262088 (+)
grxcr1b LOC108263619 other upstream 1368328 19214207 ~ 19217276 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other downstream 436503 21025733 ~ 21118964 (+)
wu:fj16a03 NA other downstream 1431092 22020322 ~ 22023811 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other downstream 1896080 22485310 ~ 22552752 (+)
G51271 znf318 other downstream 2195098 22784328 ~ 22786505 (+)
LOC113540861 LOC108263311 other downstream 2321914 22911144 ~ 22913552 (+)

Expression


Co-expression Network