G49941


Basic Information

Item Value
gene id G49941
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20499533 ~ 20500791 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU59102
AAAAGGTCAAGGTCACATTAAGGTCACATGTCTGAAATAGGTTTCTCTTCAacacttccttcctgtttgaagcaTATTTTAAGTGTATTTCAAGAATGACTAGACTTGATGGAAGCAGAGGCATCCCTGTCAACGCCACTGGTgtcgagttctacttgttttgaTTTGTGTCTTGATTCCAACCCTGCTATTGATCCCTATAGTACTCAACTGTTACCTGGTTAGTGACTGATTGGTTTGTCTATTTGAGCCCTTGTGTTTCATTGTCCCAGGGCGAAGTCTCTttcatgtatatgtgtgtttctgagcCATGGTTCTCTGTGTTTTCTGGTTCTCTGGTTTGTACTTCTGGTTTGACTTCCCAGTTTTGTTCTGTGTCTGTGCCAATTATGATCATGACCTATGCTATGAACTCCTACTTCATCAACCCACAAATCACACTTATGATTCCAAGGTCTCAGTTTATGAATTTGCAGTGCAGTATGGATTTTAAACGAAAACCATGGTCTTAACAAAAGAGAGTCCTGTAAACTGTACCATATTTTGGATTGGCGATAAAGCTCAACAGCCTAAGGGTATTAAATGATTGTAGACGAACACCCTTCCAGATGCCAAGAGTGGGGAAAGATGGCCCCCAATCCCAACTAAATGAGCTCTgtgcctgaaacacacacaaaatcaatatAGTCATGTTTCACTGTTTTAGATGAACTAGTATAAGCTAACATCATACATCAAGTTTTAAAATACCTTTCGAATAAAGTTTACATGACACTCTCCTTTCTGTACATCAGGAGGACATTCTGGGGGGACTTTGTATGAAGTGTGGGCTTGACTTCGCTCTGCTGCGTAGGTCACGGCTGACATGAGCCACACTTCCAGAACATTAACTTCCTTAAGTAGTCCTGCAACCTCAAAGTCCTGAGAACGAATGTACAAATATTGTACTGTTCAGTCACTGAGTTATCACTTGTTTGATGCgtcagtattttaaaatatcatgttCTCATCTTATCAGGGTGTTAAAATTAACACAATTGTTTGGAGAGAATTTTTTACATACGTATCTCCGGAACATGTTGTCTGTCTTTCCGATGACGACTCCATTTAGAGATATAGTGGAGATTGTGTCCACACCTTCAAATATGAGAACAGCTCTCCTACTCTCTCTGTTGAAGCACGGTATTAGACAAAATCTTAATCTTGTTTATATGGTCAACAGCAAGCAATTACTGAGATATTGTTTAGTTAATACTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59102 True 1259 lncRNA 0.39 1 20499533 20500791

Neighbor

gene id symbol gene type direction distance location
sufu sufu,LOC107666454 coding downstream 38431 20445420 ~ 20461102 (-)
trim8a LOC108263671 coding downstream 57301 20427871 ~ 20442232 (-)
gabra2a gabra2,si:dkey-52k1.6,LOC108262858,LOC107747556,LOC107666515,LOC107569424 coding downstream 156031 20327905 ~ 20343502 (-)
gabrg1 gabrg1,si:dkey-155h10.3,LOC107747559,LOC107667066,LOC107666522,LOC107585224,LOC107569420,LOC107733747 coding downstream 182364 20309844 ~ 20317169 (-)
gabrb1 gabrb1,LOC107666521,LOC107747557,LOC107733746,LOC107585222,LOC107667065 coding downstream 220491 20262035 ~ 20279042 (-)
desi2 desi2,LOC107587845,LOC107747542,LOC107733777,LOC107585270 coding upstream 53702 20554493 ~ 20573783 (-)
zbtb18 zbtb18 coding upstream 119141 20619932 ~ 20629167 (-)
sdccag8 sdccag8,LOC108263444 coding upstream 248881 20749672 ~ 20802069 (-)
dync2li1 dync2li1 coding upstream 354904 20855695 ~ 20865244 (-)
abcg5 abcg5,LOC107747536,LOC107733783 coding upstream 367598 20868389 ~ 20877844 (-)
G49841 LOC108263473 non-coding downstream 20845 20477708 ~ 20478688 (-)
G49836 zmp:0000000662,LOC108263473,LOC108421699,LOC107747548,LOC107569423,LOC107666523 non-coding downstream 26238 20472477 ~ 20473295 (-)
G49806 NA non-coding downstream 34583 20463893 ~ 20464950 (-)
G49797 NA non-coding downstream 139082 20297118 ~ 20360451 (-)
LOC113537651 NA non-coding downstream 148057 20349410 ~ 20351476 (-)
G49942 manba non-coding upstream 5 20500796 ~ 20502665 (-)
G49943 NA non-coding upstream 3446 20504237 ~ 20504970 (-)
G49944 NA non-coding upstream 5010 20505801 ~ 20506409 (-)
G49957 NA non-coding upstream 20903 20521694 ~ 20522064 (-)
G49959 NA non-coding upstream 22273 20523064 ~ 20523298 (-)
gng2 gbg2,gng2,LOC108239039,LOC106603227 other downstream 130088 20357934 ~ 20369445 (-)
atp10d atp10d,LOC107556926 other downstream 243013 20224909 ~ 20256520 (-)
metap1 metap1,LOC107556924 other downstream 293940 20182053 ~ 20205593 (-)
slc4a11 slc4a11,LOC107695019 other downstream 731399 19716600 ~ 19768134 (-)
atrn atrn,LOC107568639,LOC107693325,LOC107695011 other downstream 831872 19614717 ~ 19667661 (-)
prkceb prkceb,prkce,LOC108263296,LOC108422423,LOC107699301,LOC107727364,LOC107708403 other upstream 886952 21387743 ~ 21478705 (-)
plekhh2 plekhh2 other upstream 1110872 21611663 ~ 21645512 (-)
G50837 NA other upstream 1449064 21949855 ~ 21950189 (-)
LOC113540944 eml4,LOC107586470,LOC107698167 other upstream 1534494 22035285 ~ 22123649 (-)
LOC113541574 LOC108263228 other upstream 2064980 22565771 ~ 22571868 (-)

Expression


Co-expression Network