G50140


Basic Information

Item Value
gene id G50140
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 20950570 ~ 20950991 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU59323
gaagttcattccaccaccttggtgccagaacagagaagagtctcgatgcatgccttccttgtagagatggtgggaccagtcgagcagtgctagaggatcggagggagcgtggtgccgctcgaggtgtgataagtgctttgagataagtgggtgctggtccgtttttggctttgtagggaagcatcagtgttttaaatctgatgcgggcagctacaggaagccagtggagggagcgcagcaatggggtggtgtgggaaaatttaggaaggttgaaaaccagtcgtgcagctgcattctggatcagttgtagaggacgaatggcgctcagaggcagacctgccaggagtgagttgcagtagtccagtcttgaaatgacaagggactgaacaagcacatgtgtggcctgtgtggaaagaaatgga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59323 True 422 lncRNA 0.52 1 20950570 20950991

Neighbor

gene id symbol gene type direction distance location
abcg8 abcg8,LOC107666472 coding upstream 64858 20877886 ~ 20885712 (+)
cep170aa cep170 coding upstream 94868 20802370 ~ 20855702 (+)
akt3a akt3,akt3a,LOC103024575,LOC108422057,LOC107666430,LOC106589689 coding upstream 205243 20648884 ~ 20745327 (+)
adss2 adss,LOC107666526,LOC101478205,LOC102202649,LOC100691320 coding upstream 348522 20573244 ~ 20602048 (+)
dctn1b dctn1,LOC108263710 coding upstream 397976 20522100 ~ 20552594 (+)
ppm1ba ppm1b,LOC107733761,LOC107585253,LOC107698745,LOC107747533,LOC107666482 coding downstream 35898 20986889 ~ 20996378 (+)
slc3a1 slc3a1,LOC107585281,LOC107579201 coding downstream 51378 21002369 ~ 21010590 (+)
trnae-cuc_10 NA coding downstream 54459 21005450 ~ 21005519 (+)
six3a six3,LOC107733790,LOC107585256 coding downstream 229944 21180935 ~ 21183818 (+)
socs5b LOC108263298,LOC108422458,LOC107727375 coding downstream 529708 21480699 ~ 21501499 (+)
G49857 NA non-coding upstream 234273 20619938 ~ 20716297 (+)
G49864 NA non-coding upstream 361340 20585604 ~ 20589230 (+)
G49863 NA non-coding upstream 365070 20580801 ~ 20585500 (+)
G49853 NA non-coding upstream 426521 20523816 ~ 20524049 (+)
G49643 NA non-coding upstream 759426 20155901 ~ 20191144 (+)
G50145 NA non-coding downstream 12271 20963262 ~ 21043534 (+)
G50284 NA non-coding downstream 228615 21179606 ~ 21179811 (+)
G50297 NA non-coding downstream 247286 21198277 ~ 21198508 (+)
G50310 six2,six2a,LOC107666385,LOC107602488,LOC107602487 non-coding downstream 255403 21206394 ~ 21210115 (+)
G50311 NA non-coding downstream 259846 21210837 ~ 21213946 (+)
G49862 NA other upstream 375091 20574973 ~ 20575479 (+)
pprc1 LOC108263826,LOC108421584 other upstream 557969 20382346 ~ 20392601 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other upstream 1594472 19341350 ~ 19356098 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other upstream 1688482 19256064 ~ 19262088 (+)
grxcr1b LOC108263619 other upstream 1733294 19214207 ~ 19217276 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other downstream 74742 21025733 ~ 21118964 (+)
wu:fj16a03 NA other downstream 1069331 22020322 ~ 22023811 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other downstream 1534319 22485310 ~ 22552752 (+)
G51271 znf318 other downstream 1833337 22784328 ~ 22786505 (+)
LOC113540861 LOC108263311 other downstream 1960153 22911144 ~ 22913552 (+)

Expression


Co-expression Network