G50309


Basic Information

Item Value
gene id G50309
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 21204676 ~ 21205961 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU59503
TAAAGTCTGGCTGCTGCAGGGAGAAGGCATTAATCTGTTTCTGAATTTACTGTAGTTACTCATCACACTGTGCTCGGTCATGTGGCATGATGagcttaatttttttagacACATGATTCGTGGTCATTTTTACACAACTTCGTTTATTCTGGTTACTTCTATGATAATCAATTATgtgcaatattattttttatttattttcaattatttgcGTAGTGGTTGCTCAGTAGGCCATTACACATTTTACTCATCTTCTGGAGTTAGCATATTATACCTTCTGGGCACTGTTTATTAGTGACTTCACTAGACCTATCTGGCATTGCCTTTATGACAAgatccttttctctttctcattgcTTTAGCAGCTTATTTTACCTATAAATCACGACCAGTCATTCCAGTTCTTATACACTGATCAAGTGAAAATTGCAAACTAAAAAGTGGTTTAAACTACCTTCTTATTTAACCTCTTATTGTGTTCTTCCTGCTGCAAACGATATACATATAATTGCTGAACCTTTAATGGTAACTAATGAGGTATTGAATTAATTCTGCATCCAAGTAGTGAAATCATGACGAATCTGGAAAAGACAGACCTACAGATATCTGTGTTAGTCTAAGGATACTAAATACATCTTATGAAAGTTCTTGTAATTAGCTGAATAAGGTGTGGATAAACTGCAGTGCTGGAGTCTGAAGCCCTGACATAAAGATTTACATCAGTAGTTAAAGTACAGtactttaatatataatataatataatataataattaatttttattctgtttcgtTTGGGACTGAATTGGAACTTCATGCCATTTTATCAGCTAAGCATGCACTCATAACCTTCTTCATTTGTTCACTTGGCTGTGAGCCGTATTCTTCTTTGCAGGAATTTATTTCGCATTTTAACAGCGACTTCGCTGCCAGTGATAGTCGGGGCTTTTGTGAAGGGGAGGAGAGGCTGTTAAACTTTCTGCACAAGatgttagaaagaaaaaaaaacacaactcagCGCTAGCGAGGCTAACAAGCACTCATCATCTCCTCATGCAATTCAACACGCGTATTTAATGCTATTACAGGGAAACGACCACAAACTACACCAGAAACCCAACACAACCAAACAGCCCTGCCCATTTGCACTACTCAGATTCTACAGATTCTACCATTCTCTCCCATCGTCGCTGgcctcctctttttttttctttctttctggatGTGCATATTGTGCCAGGAGTTTAGTAACCAAGCTAAATTCTCAGcaagaattaaaaatgaatgca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59503 True 1286 lncRNA 0.37 1 21204676 21205961

Neighbor

gene id symbol gene type direction distance location
prepl prepl coding downstream 179061 21010692 ~ 21025615 (-)
lrpprc lrpprc coding downstream 267039 20886598 ~ 20937637 (-)
abcg5 abcg5,LOC107747536,LOC107733783 coding downstream 326832 20868389 ~ 20877844 (-)
dync2li1 dync2li1 coding downstream 339432 20855695 ~ 20865244 (-)
sdccag8 sdccag8,LOC108263444 coding downstream 402607 20749672 ~ 20802069 (-)
six2a six2,six2a,LOC107666385,LOC107602488,LOC107602487,LOC107711421 coding upstream 1056 21207017 ~ 21210374 (-)
srbd1 srbd1 coding upstream 70824 21276785 ~ 21331058 (-)
epas1b epas1 coding upstream 142249 21348210 ~ 21384116 (-)
mcfd2 mcfd2,LOC105900047,LOC107699287 coding upstream 316247 21522208 ~ 21526777 (-)
stpg4 NA coding upstream 356756 21562717 ~ 21568242 (-)
G50295 NA non-coding downstream 13934 21190535 ~ 21190742 (-)
G50290 NA non-coding downstream 20240 21183830 ~ 21184436 (-)
G50264 NA non-coding downstream 87314 21116647 ~ 21117362 (-)
G50262 NA non-coding downstream 89061 21115416 ~ 21115615 (-)
G50261 NA non-coding downstream 93324 21111115 ~ 21111352 (-)
G50318 NA non-coding upstream 10697 21216658 ~ 21216886 (-)
G50433 NA non-coding upstream 140181 21346142 ~ 21385497 (-)
G50619 NA non-coding upstream 306644 21512605 ~ 21512822 (-)
G50624 NA non-coding upstream 309191 21515152 ~ 21515642 (-)
G50626 NA non-coding upstream 311854 21517815 ~ 21518078 (-)
gng2 gbg2,gng2,LOC108239039,LOC106603227 other downstream 835231 20357934 ~ 20369445 (-)
atp10d atp10d,LOC107556926 other downstream 948156 20224909 ~ 20256520 (-)
metap1 metap1,LOC107556924 other downstream 999083 20182053 ~ 20205593 (-)
slc4a11 slc4a11,LOC107695019 other downstream 1436542 19716600 ~ 19768134 (-)
atrn atrn,LOC107568639,LOC107693325,LOC107695011 other downstream 1537015 19614717 ~ 19667661 (-)
prkceb prkceb,prkce,LOC108263296,LOC108422423,LOC107699301,LOC107727364,LOC107708403 other upstream 181782 21387743 ~ 21478705 (-)
plekhh2 plekhh2 other upstream 405702 21611663 ~ 21645512 (-)
G50837 NA other upstream 743894 21949855 ~ 21950189 (-)
LOC113540944 eml4,LOC107586470,LOC107698167 other upstream 829324 22035285 ~ 22123649 (-)
LOC113541574 LOC108263228 other upstream 1359810 22565771 ~ 22571868 (-)

Expression


Co-expression Network