G50311


Basic Information

Item Value
gene id G50311
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 21210837 ~ 21213946 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU59506
AGCCTGACTGTGGAAAACAGCAGGCCTATAGGCGAATATGGAGTGTAGGGTGTATATGAGCAGAGTCTGTAGTGCGCAGGGATGAAGCGCGCGTGCGGAAGCGACTCGCAGCTCAGAGGGCGCTTTAAAGATAGAGTTAAATCTCTGAGGGACAGCGTTCACAGAGGACAGAGGTTCCGTTAGCCAGCATGCACTCAAAGTGGACAGTGCACTCTGCGAGGGACGCCTTCTGCCGCTAAATAGTTTGTATCGTGCCATCGAACTACTGGCTATGCGGGGCATGAGCACTTGATGTATGTTTGACCTCCGTTGTCCCAAGAGGCGCCGGTGCGCGTGATGTCTGCGGGATCTGTTCAGTGTCCGCGCGAGCGCGGCGGCAGGCAGTAACCCGGCACTACACCACTCTGTACAGCACAGTGAACCAGAGCAGAGGAGAACAGAGCTCAGGGTGACCGAGATTTCTCACCGAAACAGCTCAGCTCACTTCCCATCCGACATCCAGACCACTGGCGCAGATTCCTCCTGAACTCACGCGCACTTTTGTGCACATGCTCACGCGCGCTCAAGTCCGAGCGCAGATACACTCTTATTTATGAAACGAGGAGTTCTGTCTGATATTTAAAATTCCCGGAATGATAGGCAATGCATTATCATAACAAATTAAAGTAGCTTACATTCAAAGTTATGTTTTAAGGAAACTTGGATTAAAAGTATGATAAACATTTCTGCCACTGGTATATTCTCCAACATGTAGCGCATAAATCACAACAGTCCCCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59506 True 778 lncRNA 0.50 2 21210837 21213946

Neighbor

gene id symbol gene type direction distance location
six3a six3,LOC107733790,LOC107585256 coding upstream 27019 21180935 ~ 21183818 (+)
slc3a1 slc3a1,LOC107585281,LOC107579201 coding upstream 200247 21002369 ~ 21010590 (+)
trnae-cuc_10 NA coding upstream 205318 21005450 ~ 21005519 (+)
ppm1ba ppm1b,LOC107733761,LOC107585253,LOC107698745,LOC107747533,LOC107666482 coding upstream 214459 20986889 ~ 20996378 (+)
abcg8 abcg8,LOC107666472 coding upstream 325125 20877886 ~ 20885712 (+)
socs5b LOC108263298,LOC108422458,LOC107727375 coding downstream 266753 21480699 ~ 21501499 (+)
prop1 LOC108263276 coding downstream 303840 21517786 ~ 21522535 (+)
ttc7a ttc7a,LOC107586483,LOC107699274 coding downstream 317325 21531271 ~ 21560099 (+)
epcam NA coding downstream 392439 21606385 ~ 21609142 (+)
thada thada,LOC104958480 coding downstream 431790 21645736 ~ 21731864 (+)
G50310 six2,six2a,LOC107666385,LOC107602488,LOC107602487 non-coding upstream 722 21206394 ~ 21210115 (+)
G50297 NA non-coding upstream 12329 21198277 ~ 21198508 (+)
G50284 NA non-coding upstream 31026 21179606 ~ 21179811 (+)
G50145 NA non-coding upstream 167303 20963262 ~ 21043534 (+)
G50140 NA non-coding upstream 259846 20950570 ~ 20950991 (+)
G50384 NA non-coding downstream 99258 21313204 ~ 21350033 (+)
G50528 NA non-coding downstream 302336 21516282 ~ 21517755 (+)
LOC117596875 NA non-coding downstream 311491 21525437 ~ 21526067 (+)
G50516 NA non-coding downstream 353469 21567415 ~ 21574053 (+)
G50772 NA non-coding downstream 654878 21868824 ~ 21869028 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other upstream 91873 21025733 ~ 21118964 (+)
G49862 NA other upstream 635358 20574973 ~ 20575479 (+)
pprc1 LOC108263826,LOC108421584 other upstream 818236 20382346 ~ 20392601 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other upstream 1854739 19341350 ~ 19356098 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other upstream 1948749 19256064 ~ 19262088 (+)
wu:fj16a03 NA other downstream 806376 22020322 ~ 22023811 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other downstream 1271364 22485310 ~ 22552752 (+)
G51271 znf318 other downstream 1570382 22784328 ~ 22786505 (+)
LOC113540861 LOC108263311 other downstream 1697198 22911144 ~ 22913552 (+)
G51562 NA other downstream 2240482 23454428 ~ 23455549 (+)

Expression


Co-expression Network