G50433


Basic Information

Item Value
gene id G50433
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 21346142 ~ 21385497 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU59640
tatatatatatatatatatatatatatatatatatatatatatatatgtatgtatatatacacacacacaaaatcaaaatgtaTAGTAGATGACACTAATATAATTGCATGcacttaattattttttttctagagaaacaaaatataaaccatAGTCAGAGATGCACTGATGATTACTGAAAATCCTATGGTTGAACACCAGCCTCAGGGCCAGATGTATGTGGCGCGATGCGGCTGCAAAATGCATCTGACATTTGTTCAATTTACTTGAAATGCAAGTAATgaagagataataataataaagataataataaagacCCTTATGTCAGAACAAGACAACGGTGTGGAGGGCATTAATATGGCTCGTATGCCATTAAATCCCCAATTGGCTTAACcctaatgaaaagaaaatgtgcatgTATAATTGATGCATGTGTTCATGACATAGGCTGTGTTAAAATAGTATTAAATTGTTTCCTTCCTTGGCACTGGGGTGGAACCCTCAAGGGTAAATCATTTGTATCTTTAATATCTTTTAAATATGAtatctttaatatgtatctttcacctcgAAATGGGGATATAGTGTACCTAAAATGATTACATAAATGGACCGTAAttagtttttagagtaaagctaaTAGTACACTGCACGCacatttctaggtaaaagatgtATGCTAAAGGTGTACTCTTGAGGGTACCACCTCAGCagcaaggaaaggtacagtttactacctttttttctgagattgtAGGTTACTCAGGCTTCATCCCAATGGACGAACAGTATTAAAGCACACAGATTGCCTATATTGTACTTTTAACCAAATTTCTAAAAtgttattgcattattattcttcataaaaaatattgaatctattagaattaatgaaaaaaaattattcttcaGGAAAAAGGCATCTAACAGCATTGGTTCTACTGCTGTGAGAAAAACATATGGCGCTAATTTACACCTGAGGCAgacaaatcacacacatatcTGACTATCACTAATGCCTTACGTACAGTATGCAGTCAGCTGCACTTCCCACTTCTTGACCTTTTTGTGTGCTCAAGTTGCACATTTCGTACATAACACCCAAAGTTTTTGTGGCTGAATTGTGATTGAAAgtgtgtgcaaaaaaacatacatCTGGCTGCTGAAATTTTTGCTACAGAGATTGATGCCAAGGTAAAATGTAGTAAACAGAGTTAACCTCTATCATATTGTATCGTGCTGTGgccaaatatatattttaacactgGTGAGGCTCTTTtagatgattattttctgaaACAGTTTCCCATTGTCTCCTTAAAAGTTTGGGCTTGATAGTCACACTAAGCAATTCTGTATTTTAATGTGCTAAACCAGTATcgatgttattattattattattattattattattattattattgttgttgtagttgttgttgttgttgttgacatTAAGGTATGGGAAATATTACCCAGTGAAAAGTTGTATCTCTGCACTGGtatcatattaaaat
>TU59644
tatatatatatatatatatatatatatatatatatatatatatatatgtatgtatatatacacacacacaaaatcaaaatgtaTAGTAGATGACACTAATATAATTGCATGcacttaattattttttttctagagaaacaaaatataaaccatAGTCAGAGATGCACTGATGATTACTGAAAATCCTATGGTTGAACACCAGCCTCAGGGCCAGATGTATGTGGCGCGATGCGGCTGCAAAATGCATCTGACATTTGTTCAATTTACTTGAAATGCAAGTAATgaagagataataataataaagataataataaagacCCTTATGTCAGAACAAGACAACGGTGTGGAGGGCATTAATATGGCTCGTATGCCATTAAATCCCCAATTGGCTTAACcctaatgaaaagaaaatgtgcatgTATAATTGATGCATGTGTTCATGACATAGGCTGTGTTAAAATAGTATTAAATTGTTTCCTTCCTTGGCACTGGGGTGGAACCCTCAAGGGTAAATCATTTGTATCTTTAATATCTTTTAAATATGAtatctttaatatgtatctttcacctcgAAATGGGGATATAGTGTACCTAAAATGATTACATAAATGGACCGTAAttagtttttagagtaaagctaaTAGTACACTGCACGCacatttctaggtaaaagatgtATGCTAAAGGTGTACTCTTGAGGGTACCACCTCAGCagcaaggaaaggtacagtttactacctttttttctgagattgtAGGTTACTCAGGCTTCATCCCAATGGACGAACAGTATTAAAGCACACAGATTGCCTATATTGTACTTTTAACCAAATTTCTAAAAtgttattgcattattattcttcataaaaaatattgaatctattagaattaatgaaaaaaaattattcttcaGGAAAAAGGCATCTAACAGCATTGGTTCTACTGCTGTGAGAAAAACATATGGCGCTAATTTACACCTGAGGCAgacaaatcacacacatatcTGACTATCACTAATGCCTTACGTACAGTATGCAGTCAGCTGCACTTCCCACTTCTTGACCTTTTTGTGTGCTCAAGTTGCACATTTCGTACATAACACCCAAAGTTTTTGTGGCTGAATTGTGATTGAAAgtgtgtgcaaaaaaacatacatCTGGCTGCTGAAATTTTTGCTACAGAGATTGATGCCAAGGTAAAATGTAGTAAACAGAGTTAACCTCTATCATATTGTATCGTGCTGTGgccaaatatatattttaacactgGTGAGGCTCTTTtagatgattattttctgaaACAGTTTCCCATTGTCTCCTTAAAAGTTTGGGCTTGATAGTCACACTAAGCAATTCTGTATTTTAATGTGCTAAACCAGTATcgatgttattattattattattattattattattattattattattattattattattattgttgttgttgtagttgttgttgttgttgttgacatTAAGGTATGGGAAATATTACCCAGTGAAAAGTTGTATCTCTGCACTGGtatcatattaaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU59640 False 1518 lncRNA 0.33 3 21346142 21385497
TU59644 True 1539 lncRNA 0.32 2 21346142 21385497

Neighbor

gene id symbol gene type direction distance location
srbd1 srbd1 coding downstream 15084 21276785 ~ 21331058 (-)
six2a six2,six2a,LOC107666385,LOC107602488,LOC107602487,LOC107711421 coding downstream 135768 21207017 ~ 21210374 (-)
prepl prepl coding downstream 320527 21010692 ~ 21025615 (-)
lrpprc lrpprc coding downstream 408505 20886598 ~ 20937637 (-)
abcg5 abcg5,LOC107747536,LOC107733783 coding downstream 468298 20868389 ~ 20877844 (-)
mcfd2 mcfd2,LOC105900047,LOC107699287 coding upstream 136711 21522208 ~ 21526777 (-)
stpg4 NA coding upstream 177220 21562717 ~ 21568242 (-)
calm2a calm1,LOC102293206,LOC102778633,LOC107396020 coding upstream 183959 21569456 ~ 21574081 (-)
si:ch73-105b23.6 LOC108262810 coding upstream 192366 21577863 ~ 21602259 (-)
LOC113544981 NA coding upstream 523484 21908981 ~ 21910793 (-)
G50318 NA non-coding downstream 129256 21216658 ~ 21216886 (-)
G50309 NA non-coding downstream 140181 21204676 ~ 21205961 (-)
G50295 NA non-coding downstream 155400 21190535 ~ 21190742 (-)
G50290 NA non-coding downstream 161706 21183830 ~ 21184436 (-)
G50264 NA non-coding downstream 228780 21116647 ~ 21117362 (-)
G50619 NA non-coding upstream 127108 21512605 ~ 21512822 (-)
G50624 NA non-coding upstream 129655 21515152 ~ 21515642 (-)
G50626 NA non-coding upstream 132318 21517815 ~ 21518078 (-)
G50647 NA non-coding upstream 220931 21606428 ~ 21610897 (-)
G50656 NA non-coding upstream 274161 21659658 ~ 21737394 (-)
gng2 gbg2,gng2,LOC108239039,LOC106603227 other downstream 976697 20357934 ~ 20369445 (-)
atp10d atp10d,LOC107556926 other downstream 1089622 20224909 ~ 20256520 (-)
metap1 metap1,LOC107556924 other downstream 1140549 20182053 ~ 20205593 (-)
slc4a11 slc4a11,LOC107695019 other downstream 1578008 19716600 ~ 19768134 (-)
atrn atrn,LOC107568639,LOC107693325,LOC107695011 other downstream 1678481 19614717 ~ 19667661 (-)
prkceb prkceb,prkce,LOC108263296,LOC108422423,LOC107699301,LOC107727364,LOC107708403 other upstream 2246 21387743 ~ 21478705 (-)
plekhh2 plekhh2 other upstream 226166 21611663 ~ 21645512 (-)
G50837 NA other upstream 564358 21949855 ~ 21950189 (-)
LOC113540944 eml4,LOC107586470,LOC107698167 other upstream 649788 22035285 ~ 22123649 (-)
LOC113541574 LOC108263228 other upstream 1180274 22565771 ~ 22571868 (-)

Expression


Co-expression Network