G50783


Basic Information

Item Value
gene id G50783
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 21874813 ~ 21875015 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU60026
GGTTACTTAAGTGACTGCTGGGAAACACAAACTGCATAAAACAgtgcaataaatgcaaatgGCTACAATTAAGTAAAAGAGCATGATTCCCAAATTCTTCTTTCTGCAGAAGAGGAGGCTTATGTGAATGCGCCACAAATggagactgagacacagagaaagagatttaCTCATACAATTGCCACTTACAGATTGAAATACTg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60026 True 203 lncRNA 0.38 1 21874813 21875015

Neighbor

gene id symbol gene type direction distance location
LOC113542474 zfp36l2 coding upstream 138280 21733757 ~ 21736533 (+)
thada thada,LOC104958480 coding upstream 142949 21645736 ~ 21731864 (+)
epcam NA coding upstream 265671 21606385 ~ 21609142 (+)
ttc7a ttc7a,LOC107586483,LOC107699274 coding upstream 314714 21531271 ~ 21560099 (+)
prop1 LOC108263276 coding upstream 352278 21517786 ~ 21522535 (+)
haao haao,LOC107727361,LOC107699283,LOC107586504,LOC107590002,LOC107707146 coding downstream 24541 21899556 ~ 21905109 (+)
hcar1-3 NA coding downstream 39534 21914549 ~ 21917668 (+)
LOC113537982 kcng3,LOC107758134,LOC107756869,LOC107590001,LOC107586474 coding downstream 79890 21954905 ~ 21960399 (+)
LOC113537563 LOC108263692,LOC108422693 coding downstream 92726 21967741 ~ 21970960 (+)
prph2b LOC108262942,LOC108422795,LOC103028857,LOC107578331,LOC107739477,LOC107586467,LOC107590000 coding downstream 369094 22244109 ~ 22265419 (+)
G50772 NA non-coding upstream 5785 21868824 ~ 21869028 (+)
G50516 NA non-coding upstream 300760 21567415 ~ 21574053 (+)
LOC117596875 NA non-coding upstream 348746 21525437 ~ 21526067 (+)
G50528 NA non-coding upstream 357058 21516282 ~ 21517755 (+)
G50384 NA non-coding upstream 524780 21313204 ~ 21350033 (+)
LOC113545609 NA non-coding downstream 129703 22004718 ~ 22015489 (+)
G50880 eml4 non-coding downstream 160467 22035482 ~ 22041152 (+)
LOC113544795 NA non-coding downstream 352430 22227445 ~ 22229448 (+)
G50936 NA non-coding downstream 376820 22251835 ~ 22252048 (+)
G50929 NA non-coding downstream 391682 22266697 ~ 22337044 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other upstream 755849 21025733 ~ 21118964 (+)
G49862 NA other upstream 1299334 20574973 ~ 20575479 (+)
pprc1 LOC108263826,LOC108421584 other upstream 1482212 20382346 ~ 20392601 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other upstream 2518715 19341350 ~ 19356098 (+)
LOC113539574 htra2,LOC108263241,LOC108441752,LOC107582530,LOC107690150,LOC107733689,LOC105899646,LOC106589831 other upstream 2612725 19256064 ~ 19262088 (+)
wu:fj16a03 NA other downstream 145307 22020322 ~ 22023811 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other downstream 610295 22485310 ~ 22552752 (+)
G51271 znf318 other downstream 909313 22784328 ~ 22786505 (+)
LOC113540861 LOC108263311 other downstream 1036129 22911144 ~ 22913552 (+)
G51562 NA other downstream 1579413 23454428 ~ 23455549 (+)

Expression


Co-expression Network