G50929


Basic Information

Item Value
gene id G50929
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22266697 ~ 22337044 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU60200
CTCTCATtcctttcttattttatttttttttgttttacaatatTGTACAATGTATCCATTTATACAATAATTCACATATTAACAAGTAAATCTTTGACGCTGGATTCCAATTAAACCTCAACACAGGAAACATGCTTACTGTGAGAAACCCCAGGGAACCCTGTTGAGACTTTGAGTGTGTGCGCACACGTACACATGCTTCGGGACAATAGTCCTGTTTGAGTGGACACTCCACAACTTTTCAACGTCATGTCAATAAGCTTCAGAATCATTACAACTTCTAAGACAATATCTTGCCGTCACTTAAACTGAGTCATgagtttatacttttatatttagcCCTAGCACCCTTTCGTTTCCTGGATATTTCTCAAGAAGTCCTGCTAATAACATTGGGGGGCTTGTAATTTGATTTTCTTTATCACATTAGGCAGGAAGTAATTTGACATCTGCCAATGTTAGTAATTTGATCAACTTAATGTTAAGAAATCACCATCACATGGTTTGTCCCCTGATTCTGTTTATCATAGAGGATCATGGGATCAACATGTGAAGCAAGTATATTaggtttttctgtgttttttttttattttttttattgttgttcgttttttaaacaaaactgctgttgtagctcaaaGACTTAAAATGTCTGAAActacacgtgcacacacacacgcgcacacacacgcgcgcacacacacaca
>TU60202
CTCTCATtcctttcttattttatttttttttgttttacaatatTGTACAATGTATCCATTTATACAATAATTCACATATTAACAAGTAAATCTTTGACGCTGGATTCCAATTAAACCTCAACACAGGAAACATGCTTACTGTGAGAAACCCCAGGGAACCCTGTTGAGACTTTGAGTGTGTGCGCACACGTACACATGCTTCGGGACAATAGTCCTGTTTGAGTGGACACTCCACAACTTTTCAACGTCATGTCAATAAGCTTCAGAATCATTACAACTTCTAAGACAATATCTTGCCGTCACTTAAACTGAGTCATgagtttatacttttatatttagcCCTAGCACCCTTTCGTTTCCTGGATATTTCTCAAGAAGTCCTGCTAATAACATTGGGGGGCTTGTAATTTGATTTTCTTTATCACATTAGGCAGGAAGTAATTTGACATCTGCCAATGTTAGTAATTTGATCAACTTAATGTTAAGAAATCACCATCACATGGTTTGTCCCCTGATTCTGTTTATCATAGAGGATCATGGGATCAACATGTGAAGCAAGTATATTaggtttttctgtgttttttttttattttttttattgttgttcgttttttaaacaaaactgctgttgtagctcaaaGACTTAAAATGTCTGAAActacacgtgcacacacacacgcgcacacacacacacacacacacacacacacacacacacacgttaagtCAGTAGGTGTAATAAGCTTCCTCAACCACATAAGCAAAATCCAAAACATATTTCCCCAAAGTGGAGGTCCGCCATGATGAATTTTCACAAAGCTacacataaataacatttaacaaaaacaggTTGCAAAATTGACAACGGTGTTAAATTAATTCTGTTCACTTAGACAACCATATAAATCCatcacactataaacacaccgGCCTTACAAGCACACAAAGCACACACGCTACAGGCACTCACAGACACATGTGACACTTGTGCACTCCCAGATTTCCTCAGGTTGGCTTACATTTGCTTCACTGAGCATTCAGTTGCTGGGTGCCCTCAGCAGAGATATTGCAGTGACAGGGAATAGGGAGAAAGGGAGTAGGCCATATGACCTGAAGATGGCGCCATTCCATTATGGCTACTATTGAGACCCAAGGGTCATTGAGGAACATTGTGCTTGCCTTGGAGAGAACACCAGCATTATTCAATATTAAAGCAATCTGAGAACTGCATCTGTGCAGTAAACAATACTTGAGCTGAAAGAGCATAAAATAAGTTAATAGTGTCAGGGACAGACAGAACTTAAATAGCTTTTCTCAGTTCTCTCAGTTACTTTGAGAGCCTATGCTACAGGAGAAAGTATCATTTTGCAGTTAAATACCTTGgcaatatgtttgttttttacttttatttttaaatatcaatttAGATCAAATAATAAAGTAAGAGGTAAGAACACCTcccaaaaaagacagaaaaaaaagccatgcaTTCATCCACtcaaagggagaaaaaagaaacataaggAAGGAAAGGAGTGTGCGAGAGGCGGCATTGATGTGGCAACCTCTGGCGTAAATGTGCAGGTCCCTGGTTAGTTTAGATTTGGCATTAGCCAAGAAACTCCAGGACCTCTCAGGAAGTGATATCACAGGTGCTGCCAGTCAATGCCAACCAGAGTCTGATTAGCTTCTTGGGCATGACCGATCTCCTCTGTGATGCTGTGCTGGCGCCAGAGCTTCTGAATCTTTCTGTAGCGCTCGTGGCACAGGTGTAAAGGGTTCCCCCG
>TU60203
CTCTCATtcctttcttattttatttttttttgttttacaatatTGTACAATGTATCCATTTATACAATAATTCACATATTAACAAGTAAATCTTTGACGCTGGATTCCAATTAAACCTCAACACAGGAAACATGCTTACTGTGAGAAACCCCAGGGAACCCTGTTGAGACTTTGAGTGTGTGCGCACACGTACACATGCTTCGGGACAATAGTCCTGTTTGAGTGGACACTCCACAACTTTTCAACGTCATGTCAATAAGCTTCAGAATCATTACAACTTCTAAGACAATATCTTGCCGTCACTTAAACTGAGTCATgagtttatacttttatatttagcCCTAGCACCCTTTCGTTTCCTGGATATTTCTCAAGAAGTCCTGCTAATAACATTGGGGGGCTTGTAATTTGATTTTCTTTATCACATTAGGCAGGAAGTAATTTGACATCTGCCAATGTTAGTAATTTGATCAACTTAATGTTAAGAAATCACCATCACATGGTTTGTCCCCTGATTCTGTTTATCATAGAGGATCATGGGATCAACATGTGAAGCAAGTATATTaggtttttctgtgttttttttttattttttttattgttgttcgttttttaaacaaaactgctgttgtagctcaaaGACTTAAAATGTCTGAAActacacgtgcacacacacacgcgcacacacacacacacacacacacacacacacgttaagtCAGTAGGTGTAATAAGCTTCCTCAACCACATAAGCAAAATCCAAAACATATTTCCCCAAAGTGGAGGTCCGCCATGATGAATTTTCACAAAGCTacacataaataacatttaacaaaaacaggTTGCAAAATTGACAACGGTGTTAAATTAATTCTGTTCACTTAGACAACCATATAAATCCatcacactataaacacaccgGCCTTACAAGCACACAAAGCACACACGCTACAGGCACTCACAGACACATGTGACACTTGTGCACTCCCAGATTTCCTCAGGTTGGCTTACATTTGCTTCACTGAGCATTCAGTTGCTGGGTGCCCTCAGCAGAGATATTGCAGTGACAGGGAATAGGGAGAAAGGGAGTAGGCCATATGACCTGAAGATGGCGCCATTCCATTATGGCTACTATTGAGACCCAAGGGTCATTGAGGAACATTGTGCTTGCCTTGGAGAGAACACCAGCATTATTCAATATTAAAGCAATCTGAGAACTGCATCTGTGCAGTAAACAATACTTGAGCTGAAAGAGCATAAAATAAGTTAATAGTGTCAGGGACAGACAGAACTTAAATAGCTTTTCTCAGTTCTCTCAGTTACTTTGAGAGCCTATGCTACAGGAGAAAGTATCATTTTGCAGTTAAATACCTTGgcaatatgtttgttttttacttttatttttaaatatcaatttAGATCAAATAATAAAGTAAGAGGTAAGAACACCTcccaaaaaagacagaaaaaaaagccatgcaTTCATCCACtcaaagggagaaaaaagaaacataaggAAGGAAAGGAGTGTGCGAGAGGCGGCATTGATGTGGCAACCTCTGGCGTAAATGTGCAGGTCCCTGGTTAGTTTAGATTTGGCATTAGCCAAGAAACTCCAGGACCTCTCAGGAAGTGATATCACAGGTGCTGCCAGTCAATGCCAACCAGAGTCTGATTAGCTTCTTGGGCATGACCGATCTCCTCTGTGATGCTGTGCTGGCGCCAGAGCTTCTGAATCTTTCTGTAGCGCTCGTGGCACAGGTGTAAAGGGTTCCCCCG
>TU60204
CTCTCATtcctttcttattttatttttttttgttttacaatatTGTACAATGTATCCATTTATACAATAATTCACATATTAACAAGTAAATCTTTGACGCTGGATTCCAATTAAACCTCAACACAGGAAACATGCTTACTGTGAGAAACCCCAGGGAACCCTGTTGAGACTTTGAGTGTGTGCGCACACGTACACATGCTTCGGGACAATAGTCCTGTTTGAGTGGACACTCCACAACTTTTCAACGTCATGTCAATAAGCTTCAGAATCATTACAACTTCTAAGACAATATCTTGCCGTCACTTAAACTGAGTCATgagtttatacttttatatttagcCCTAGCACCCTTTCGTTTCCTGGATATTTCTCAAGAAGTCCTGCTAATAACATTGGGGGGCTTGTAATTTGATTTTCTTTATCACATTAGGCAGGAAGTAATTTGACATCTGCCAATGTTAGTAATTTGATCAACTTAATGTTAAGAAATCACCATCACATGGTTTGTCCCCTGATTCTGTTTATCATAGAGGATCATGGGATCAACATGTGAAGCAAGTATATTaggtttttctgtgttttttttttattttttttattgttgttcgttttttaaacaaaactgctgttgtagctcaaaGACTTAAAATGTCTGAAActacacgtgcacacacacacgcgcacacacacacacacacacacacacacacacacacacgttaagtCAGTAGGTGTAATAAGCTTCCTCAACCACATAAGCAAAATCCAAAACATATTTCCCCAAAGTGGAGGTCCGCCATGATGAATTTTCACAAAGCTacacataaataacatttaacaaaaacaggTTGCAAAATTGACAACGGTGTTAAATTAATTCTGTTCACTTAGACAACCATATAAATCCatcacactataaacacaccgGCCTTACAAGCACACAAAGCACACACGCTACAGGCACTCACAGACACATGTGACACTTGTGCACTCCCAGATTTCCTCAGGTTGGCTTACATTTGCTTCACTGAGCATTCAGTTGCTGGGTGCCCTCAGCAGAGATATTGCAGTGACAGGGAATAGGGAGAAAGGGAGTAGGCCATATGACCTGAAGATGGCGCCATTCCATTATGGCTACTATTGAGACCCAAGGGTCATTGAGGAACATTGTGCTTGCCTTGGAGAGAACACCAGCATTATTCAATATTAAAGCAATCTGAGAACTGCATCTGTGCAGTAAACAATACTTGAGCTGAAAGAGCATAAAATAAGTTAATAGTGTCAGGGACAGACAGAACTTAAATAGCTTTTCTCAGTTCTCTCAGTTACTTTGAGAGCCTATGCTACAGGAGAAAGTATCATTTTGCAGTTAAATACCTTGgcaatatgtttgttttttacttttatttttaaatatcaatttAGATCAAATAATAAAGTAAGAGGTAAGAACACCTcccaaaaaagacagaaaaaaaagccatgcaTTCATCCACtcaaagggagaaaaaagaaacataaggAAGGAAAGGAGTGTGCGAGAGGCGGCATTGATGTGGCAACCTCTGGCGTAAATGTGCAGGTCCCTGGTTAGTTTAGATTTGGCATTAGCCAAGAAACTCCAGGACCTCTCAGGAAGTGATATCACAGGTGCTGCCAGTCAATGCCAACCAGAGTCTGATTAGCTTCTTGGGCATGACCGATCTCCTCTGTGATGCTGTGCTGGCGCCAGAGCTTCTGAATCTTTCTGTAGCGCTCGTGGCACAGGTGTAAAGGGTTCCCCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60200 False 707 lncRNA 0.36 2 22266697 22337044
TU60202 True 1787 lncRNA 0.40 2 22266697 22268508
TU60203 False 1779 lncRNA 0.40 2 22266697 22268508
TU60204 False 1785 lncRNA 0.40 2 22266697 22268508

Neighbor

gene id symbol gene type direction distance location
prph2b LOC108262942,LOC108422795,LOC103028857,LOC107578331,LOC107739477,LOC107586467,LOC107590000 coding upstream 1278 22244109 ~ 22265419 (+)
LOC113537563 LOC108263692,LOC108422693 coding upstream 295737 21967741 ~ 21970960 (+)
LOC113537982 kcng3,LOC107758134,LOC107756869,LOC107590001,LOC107586474 coding upstream 306298 21954905 ~ 21960399 (+)
hcar1-3 NA coding upstream 349029 21914549 ~ 21917668 (+)
haao haao,LOC107727361,LOC107699283,LOC107586504,LOC107590002,LOC107707146 coding upstream 361588 21899556 ~ 21905109 (+)
timm23b timm23a,LOC108263229,LOC107565600,LOC107690962,LOC108426535,LOC107561858 coding downstream 234327 22571371 ~ 22587644 (+)
yipf3 yipf3,LOC107696384 coding downstream 264512 22601556 ~ 22608030 (+)
lrrc73 lrrc73,LOC107728077,LOC106605838 coding downstream 271435 22608479 ~ 22621693 (+)
dlk2 dlk2 coding downstream 359351 22696395 ~ 22720888 (+)
mea1 mea1 coding downstream 405683 22742727 ~ 22745804 (+)
G50936 NA non-coding upstream 14649 22251835 ~ 22252048 (+)
LOC113544795 NA non-coding upstream 37249 22227445 ~ 22229448 (+)
G50880 eml4 non-coding upstream 225545 22035482 ~ 22041152 (+)
LOC113545609 NA non-coding upstream 251208 22004718 ~ 22015489 (+)
G50783 NA non-coding upstream 391682 21874813 ~ 21875015 (+)
LOC113539127 NA non-coding downstream 87375 22424419 ~ 22449509 (+)
G51161 NA non-coding downstream 197294 22534338 ~ 22536437 (+)
LOC117596907 NA non-coding downstream 392278 22729322 ~ 22736667 (+)
G51358 NA non-coding downstream 621356 22958400 ~ 22958620 (+)
G51422 NA non-coding downstream 733277 23070321 ~ 23070713 (+)
wu:fj16a03 NA other upstream 242886 22020322 ~ 22023811 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other upstream 1147733 21025733 ~ 21118964 (+)
G49862 NA other upstream 1691218 20574973 ~ 20575479 (+)
pprc1 LOC108263826,LOC108421584 other upstream 1874096 20382346 ~ 20392601 (+)
sfxn5a sfxn5,sfxn5a,LOC108262907,LOC107567846,LOC107733701,LOC107690191 other upstream 2910599 19341350 ~ 19356098 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other downstream 148266 22485310 ~ 22552752 (+)
G51271 znf318 other downstream 447284 22784328 ~ 22786505 (+)
LOC113540861 LOC108263311 other downstream 574100 22911144 ~ 22913552 (+)
G51562 NA other downstream 1117384 23454428 ~ 23455549 (+)
G51749 NA other downstream 1359988 23697032 ~ 23697294 (+)

Expression


Co-expression Network