G51053


Basic Information

Item Value
gene id G51053
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22058153 ~ 22059321 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU60351
CTCACATAGCGTACATGAAGAAAAGTCTCTATTATCCTGTTGAGCATGACATTTATTGATTTTGATTTGAATGACGAAGGTGTATGACATGGGCTGTGTCTGAGTAGGAGACGGCAAGTTATTTAATTGTACTATACAAAGATTAACCTTGTAATGCAACAGAAGCAAATTTTACTTTGTATCTAGCCATCATGGTATCTCAGTTATTTTttcttgaatgaatgaatgaatgaatgaatgaattaattaattggATTGTTAAACTGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60351 True 268 lncRNA 0.33 2 22058153 22059321

Neighbor

gene id symbol gene type direction distance location
LOC113544981 NA coding downstream 147360 21908981 ~ 21910793 (-)
si:ch73-105b23.6 LOC108262810 coding downstream 455894 21577863 ~ 21602259 (-)
calm2a calm1,LOC102293206,LOC102778633,LOC107396020 coding downstream 484072 21569456 ~ 21574081 (-)
stpg4 NA coding downstream 489911 21562717 ~ 21568242 (-)
mcfd2 mcfd2,LOC105900047,LOC107699287 coding downstream 531376 21522208 ~ 21526777 (-)
pkdcca pkdcc coding upstream 120826 22180147 ~ 22204975 (-)
ubr2 ubr2 coding upstream 207375 22266696 ~ 22299362 (-)
LOC113538327 LOC108263699,LOC108420514 coding upstream 241596 22300917 ~ 22317379 (-)
prkn park2 coding upstream 258098 22317419 ~ 22424411 (-)
ncoa4 ncoa4 coding upstream 529731 22589052 ~ 22598199 (-)
G51050 NA non-coding downstream 22991 22034943 ~ 22035162 (-)
LOC113544581 NA non-coding downstream 54381 22001047 ~ 22003772 (-)
LOC113544235 NA non-coding downstream 159114 21893534 ~ 21899039 (-)
trnai-uau NA non-coding downstream 161876 21896184 ~ 21896277 (-)
G50802 NA non-coding downstream 176047 21881886 ~ 21882106 (-)
G51058 NA non-coding upstream 47771 22107092 ~ 22192916 (-)
LOC113538981 NA non-coding upstream 94027 22153348 ~ 22164424 (-)
LOC117596869 NA non-coding upstream 106418 22165739 ~ 22177331 (-)
G51169 qki,LOC107739475,LOC107565601,LOC107669572 non-coding upstream 484906 22544227 ~ 22546490 (-)
G51276 NA non-coding upstream 546226 22605547 ~ 22608037 (-)
G50837 NA other downstream 107964 21949855 ~ 21950189 (-)
plekhh2 plekhh2 other downstream 412641 21611663 ~ 21645512 (-)
prkceb prkceb,prkce,LOC108263296,LOC108422423,LOC107699301,LOC107727364,LOC107708403 other downstream 579448 21387743 ~ 21478705 (-)
gng2 gbg2,gng2,LOC108239039,LOC106603227 other downstream 1688708 20357934 ~ 20369445 (-)
atp10d atp10d,LOC107556926 other downstream 1801633 20224909 ~ 20256520 (-)
LOC113541574 LOC108263228 other upstream 506450 22565771 ~ 22571868 (-)
znf318 znf318 other upstream 715034 22774355 ~ 22788804 (-)
G51576 NA other upstream 1388587 23447908 ~ 23454217 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other upstream 1957575 24016896 ~ 24040100 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other upstream 2049030 24108351 ~ 24132483 (-)

Expression


Co-expression Network