G51169 (qki,LOC107739475,LOC107565601,LOC107669572)


Basic Information

Item Value
gene id G51169
gene name qki,LOC107739475,LOC107565601,LOC107669572
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22544227 ~ 22546490 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU60485
cacacacacacacacatatatatatatatatatatatacacacacacacacacatattcctGCACTGCTGAAGGGGCACTAGGCACAGATACAATATTTATAAGCATATCTTTAGGCAGAGGGGTGGCCagtgtaaacaaaacaaaaacaaaagtagtGTGTCTGACTGACTGCTAGGCTTGATTTCATAATTCATTAACACTCAAGAAATAACAAGGCCGCTGTGAAACGAAAGCGCATGTGTGTTAACACTCAGATCGGATGAGGGGCTCAGTAAGGATCCTCGAAAGCACTTTTAGCCTTTCGTGGGGAAAGCCACACCTAAAGAATAAAGGAAGGGAATGTGAAATTAGTGCCAGGAGTGTCTGTCCTCAGGAAGCAACACACTACAATTCCATGCGTTACCAAAGCCATTTTGGGACGGCTGTTCCTAAGACCTTTGAAAAGCAGAGATGCTGGATTTGGTCACTGCATGCATAaggctatgttttttttatattggttCATATTACGCTGTAAACAACCTTGGAACTCACTGCCACAGAGCACCATCAAACGGCTGTGTGAGTAGAACTTGAATAGGTCTGACTTTTATAACAATCCCACCATGACTCCCAAAACAGCCCCTGTCTGACCCCCACTGTCCCCTCACCGTCTTCATGTTACCTCTCCTGAGGCACCCTCCGCACCAAGGGAGGGAGCATCCAGAGAGAGTTTGCAGCAGTTTGGGGCTCAGTGCTTTTCTCCCTCATTATGGTACACACAGTTTCATCACAtgacattaaattaaaccaaaaacaaaacaggcttCAGGTTGCAGAAGAGACAAACAGTGAAAGGCTGGGGAGCAGAGGCTCCTGGAAGAGGGGGGGTGCTTTCCAGTCAGTCCAATAAGATGAGTGTTTGCAGGGGGGGGTGAGGGTGtcaaagggtgtgtgtgtagggtgagTGAGGGTCAGAAAAGGGGATGAAGGGAGTGGGTCTGCCTTAAAAAGGAGGCCTGCCGGCTGGCTCTGCGCGCTGCACAGTGATGGGAAAGTGACAGGTCTGAAAGCCCAGGTACAGCGGCAGCTCTTCGGCCTTTGAGGATGCTGTATAGGTGTACACAAGAGAGAAGACATGGATGAAATCTTCCACTCTCCTCCCTCCACAACTCTCCTCACCTCCTTTGCTGTCTCACTGAAGTGCCTTCATCAAACCCAACTCCAAAACTACCAAAATCAGGTCTCTAATACAGCGCTACTGTACTGGGCTTAGAACACTTGGAGCAGTCAGCTTGATCTTGGCAGAATAAAGGCTGCTTTATTAGACAGAGGCTAAAGCCCGCTCTGGCTCATCTCATTGGACACACTGATCTTGCCTCATGGATGCACTTTCTTGTCATTTCTCAACTTAACACTGTGCCTCTGGGAGCAGCCTGTGTTAAACTGGCAGAATGCTGTTTGTAACATGATACTCATAATCGGCTTTTCTCAAGTGCCTTAATGAAGCCATAGAGCTTGTGTGGAGAGGGGAGGACAGGGCCTTTGAGAGTGAGaacgagagagagggagcgtgCGAAAAAGAGGAAGGGAGAAAGAGTGAGGGTGGAAAGCAAAAGAGATCCCTCTCTTATAATTCATATAAAGCCAACAGAGCACTTAGCTGCCCAATCATTTATGCCACATttctttaatgtattttttttaaatgagagatGACTTTCATGAAACTAAATGGATTAAGTGGGAAAAGGTAAATGGGTGGATGAGGGTGGCAGTAAATATAGAAAGCTCATCTATATCGACAGGCAGCATTTGGGGAGGAGGTGGGGGGTGTGGGGTGGTCAGGGTTTAAGAAGAGTGACGCAAGAGTAAAGTAGGTGCTGCGCTCCATTGCCCAAGtgggtgttggtgttggtgggGTGGCATGCCAGGGCACTCACAACTCTGCTTACCTAACACGCCACTGGAGTCGATGGGGTACTCGAGGATGGAGGTGGCTGGTGCCAGTGTGTATGGGTATTCATAGGGTGCGGCGTAAATCAGGCCAGCTGACTCCGGCCCGGGAGGCACCAGGGTGGCAGCGGCAGCATGGGCGTGAGCTGAGCCGTTGGGCACGACAGTCTGGATCTGCCGAATTAGGGGCATGATGGTAGGGCCAGCAGGTGCAGGAGTGCGCAGGGCGGCCGGGGGCAACACGGGTGCTGGGCCACTGATGATGCGGGGGGCCTGGGCACTCGCTGCAAGAGAGAAGGCAAGGG

Function

symbol description
qki Enables RNA binding activity. Predicted to be involved in regulation of mRNA splicing, via spliceosome. Predicted to act upstream of or within several processes, including long-chain fatty acid biosynthetic process; positive regulation of macromolecule metabolic process; and vasculogenesis. Predicted to be part of cytoplasm. Predicted to be active in nucleus and synapse.

NR:

description
PREDICTED: protein quaking isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60485 True 2242 lncRNA 0.49 2 22544227 22546490

Neighbor

gene id symbol gene type direction distance location
prkn park2 coding downstream 119816 22317419 ~ 22424411 (-)
LOC113538327 LOC108263699,LOC108420514 coding downstream 226848 22300917 ~ 22317379 (-)
ubr2 ubr2 coding downstream 244865 22266696 ~ 22299362 (-)
pkdcca pkdcc coding downstream 339252 22180147 ~ 22204975 (-)
LOC113544981 NA coding downstream 633434 21908981 ~ 21910793 (-)
ncoa4 ncoa4 coding upstream 42562 22589052 ~ 22598199 (-)
tjap1 tjap1,LOC107728071,LOC107559778 coding upstream 80144 22626634 ~ 22689305 (-)
LOC113540869 dnph1 coding upstream 180416 22726906 ~ 22729307 (-)
LOC113540936 dnph1 coding upstream 191718 22738208 ~ 22742475 (-)
ppp2r5d ppp2r5d,LOC106605890 coding upstream 200244 22746734 ~ 22771957 (-)
G51058 NA non-coding downstream 351311 22107092 ~ 22192916 (-)
LOC117596869 NA non-coding downstream 366896 22165739 ~ 22177331 (-)
LOC113538981 NA non-coding downstream 379803 22153348 ~ 22164424 (-)
G51053 NA non-coding downstream 484906 22058153 ~ 22059321 (-)
G51050 NA non-coding downstream 509065 22034943 ~ 22035162 (-)
G51276 NA non-coding upstream 59057 22605547 ~ 22608037 (-)
G51289 mea1 non-coding upstream 100860 22647350 ~ 22743272 (-)
G51389 NA non-coding upstream 343569 22890059 ~ 22890274 (-)
G51390 NA non-coding upstream 343807 22890297 ~ 22890507 (-)
G51462 NA non-coding upstream 523853 23070343 ~ 23070721 (-)
LOC113540944 eml4,LOC107586470,LOC107698167 other downstream 420578 22035285 ~ 22123649 (-)
G50837 NA other downstream 594038 21949855 ~ 21950189 (-)
plekhh2 plekhh2 other downstream 898715 21611663 ~ 21645512 (-)
prkceb prkceb,prkce,LOC108263296,LOC108422423,LOC107699301,LOC107727364,LOC107708403 other downstream 1065522 21387743 ~ 21478705 (-)
gng2 gbg2,gng2,LOC108239039,LOC106603227 other downstream 2174782 20357934 ~ 20369445 (-)
LOC113541574 LOC108263228 other upstream 19281 22565771 ~ 22571868 (-)
znf318 znf318 other upstream 227865 22774355 ~ 22788804 (-)
G51576 NA other upstream 901418 23447908 ~ 23454217 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other upstream 1470406 24016896 ~ 24040100 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other upstream 1561861 24108351 ~ 24132483 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G37013 NA non-coding CI01000005 null 3485629 ~ 3490301 (+)
rainbow trout (Oncorhynchus mykiss) LOC110502352 LOC106605787 misc NC_048587.1 CM023241.2 17300197 ~ 17403796 (+)
eurasian perch (Perca fluviatilis) G31624 NA non-coding NC_053114.1 CM020911.1 32934711 ~ 32997421 (-)