G51271 (znf318)


Basic Information

Item Value
gene id G51271
gene name znf318
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22784328 ~ 22786505 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU60615
TGCTTGAAGCAGGGCAACCTAACCTACacttagcaaagaaaaaaggaagagacaCAGAAGGACATGGTATGATCAAGTCTGGCCTTGAATATGTTTGCCACAAACATGCCTGCTGCTTCCATGACCACAAGCAAAACAAAGGACATGGAAATTAGAGTTTCTCTATGGGCAGTGGCATAAGCTACTATGTGATATTTGGAGCAATCGCAAAGAGAGGAAGGTCTCTAAACAAAAGACAATGTGCTTGGGAGTTCCGTGTGGAAGCTTGCAAACACTGTGGTGTACAAACTGAAACCATGGTATCTTTCTTGCTCAAAAGATGTCTTCCAAAACGTCTTTCCCATTAATAATATACTGCTTGACATGCCCTGGCTAAGTGTTGGTTGAAGATAAGAGAGAGCAAAATCttgtccaaaaataaaatattaagtttgcaCTAAAAACAATAAGTATACTAAATGACAATCTACATAAAAGTCAATTTGCCAGGTCAATTAAAGACAGATCTCCAGATTTAGATTACTGTTTACGTAATAGCCTAAACAAGGCTTGCGGTAGAATTCACACTAGACTGACATTTTCTGTATAAGGAAAGCTTTCACAACAATGCCGTCCAATAAATAATTCCTGTATTTACCTTCTGCTTTTGTTTGGCATTATTCTTTTCTTCAATTACCCTCCTCTGGTTTCCACTGCATGCAATTGTCATGCTCTGTAACGGGTCTACCTTTGAGCCTTTTTTTATCTATCCCTTGAGCTTCATTTGCCCCTGTATTGATTACTTTCAGGAAGGGTCGATCTATGGCAGGGGAACTGTAGTCATCCATGGGAGTTTGTGGCAGCATCGGCATACTAGGGGGCGGGTACATGGGCCAGCCTTGGGGCATATATGGCATGTAGTTCCCATAAGGATCATAGCCAGGGGGAGGGTAGTTGGGAGGCATAAGTCCACGTGTGTGTGGCTGTGGATAGGGAGGCATCTGATGGGCAGAGGGAGCTGGGAAATTATTTGTTCCAGGATTCACAACTTCAGGAGGCAGGGGACCTGTGTTAGTCCACAGGTTCTCTTCAGCTTTAGTGCCAGGCCGAACCTCCCTCTGACTCTGACTATCAGATCGCGATGAATGTCTTTCAAGAGGAACAGACTTCTTCCTGCCATGACTTGAGGTGTGCTCATAGCTGCTGCTCCGACTGCGACTGCTTCTTCTGCTGCAGCTGCTTCCCCTGCTGGTACTCCTACTCCTGCTATTGCTACTGGAACTCCTGCTGTGGCTCCTGCGTCTCTGGTCAGACTGGTGTCTTTTGACAGATGACTTCCCAGGATTCTTACCTTGGAGGCGTTCTTGCGTCCTGGCAGCCATCTTGCTGATCTCAGCTACACCCAGGTCAAGGCCAATAGTCTTGAGGAGGTCTTGTATCTTCTCGTATTCCTCCACTTCTGCCCTAACTTGAGCATCATGAGACTCAGTTACTGGTGGGTTACTCTGAGGTTCCTCATCAAGATGCTGCACAGGTAATGCGGAAGAATAGTGCTTATCCCAATATTTGTTCTGTTTAGTTATTTGACTTTCATCTTCTTCAGGATGTCCATGACTGTAAGAATGTCCATATTCTTTCCTATGTGGCTCATGTACTACTCCAGTCTTTGGTTCATGATACAGCGCATCAGGTCCAGTTTTCGCATAGACATCCAGTAAGCTACATTGTCCAGATTTAGGCATTTCTTTTGCTGGAAATttgtcttcctcttcttcatcccCGTATAGGAACTTCTCTTCATCTTCAATATCTACaaagcttttctttttgtctggtGGTTGGGCTACTGCCTCTGCCATCACACTGAGAAGCTGGGTGAGGTCTGAATTCTCTTGGCTGCTACTTTCATGAGGGAGAGGGAACCCATGCCCACTCTCTTTGGTAGGCTGTAGTTTGCTTATGAGCTCTTCAAGTGCACTGGCATTAGAATTTCGAGCCAACACTGATGTCAGTAAGTCTGGGTCCATGTTTTTAGTCACTGCACATAATAACTGTTCCGCATCCTTTGACAGACCACTGCCTGAATTCCCTTGTGGAGAGTCAGT

Function

symbol description
znf318 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZNF318 (zinc finger protein 318).

NR:

description
PREDICTED: zinc finger protein 318

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60615 True 2084 TUCP 0.45 2 22784328 22786505

Neighbor

gene id symbol gene type direction distance location
mea1 mea1 coding upstream 38524 22742727 ~ 22745804 (+)
dlk2 dlk2 coding upstream 63440 22696395 ~ 22720888 (+)
lrrc73 lrrc73,LOC107728077,LOC106605838 coding upstream 162635 22608479 ~ 22621693 (+)
yipf3 yipf3,LOC107696384 coding upstream 176298 22601556 ~ 22608030 (+)
timm23b timm23a,LOC108263229,LOC107565600,LOC107690962,LOC108426535,LOC107561858 coding upstream 196684 22571371 ~ 22587644 (+)
LOC113540824 syndig1,LOC107717853 coding downstream 84385 22870890 ~ 22890869 (+)
si:zfos-1056e6.1 LOC108263310 coding downstream 138016 22924521 ~ 22927550 (+)
dld dll1,dld,LOC107717858,LOC107702673,LOC107660228 coding downstream 195097 22981602 ~ 22986797 (+)
actr2b actr2,LOC108423375,LOC104930021,LOC107660226,LOC105008543 coding downstream 265723 23052228 ~ 23069644 (+)
spred2b spred2,LOC108263653 coding downstream 284803 23071308 ~ 23101134 (+)
LOC117596907 NA non-coding upstream 47661 22729322 ~ 22736667 (+)
G51161 NA non-coding upstream 247891 22534338 ~ 22536437 (+)
LOC113539127 NA non-coding upstream 334819 22424419 ~ 22449509 (+)
G50929 NA non-coding upstream 447284 22266697 ~ 22337044 (+)
G50938 NA non-coding upstream 496226 22285438 ~ 22288102 (+)
G51358 NA non-coding downstream 171895 22958400 ~ 22958620 (+)
G51422 NA non-coding downstream 283816 23070321 ~ 23070713 (+)
G51425 NA non-coding downstream 286451 23072956 ~ 23145137 (+)
G51426 NA non-coding downstream 288225 23074730 ~ 23076471 (+)
G51501 NA non-coding downstream 420610 23207115 ~ 23275341 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other upstream 231576 22485310 ~ 22552752 (+)
wu:fj16a03 NA other upstream 760517 22020322 ~ 22023811 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other upstream 1665364 21025733 ~ 21118964 (+)
G49862 NA other upstream 2208849 20574973 ~ 20575479 (+)
pprc1 LOC108263826,LOC108421584 other upstream 2391727 20382346 ~ 20392601 (+)
LOC113540861 LOC108263311 other downstream 124639 22911144 ~ 22913552 (+)
G51562 NA other downstream 667923 23454428 ~ 23455549 (+)
G51749 NA other downstream 910527 23697032 ~ 23697294 (+)
slc29a3 slc29a3 other downstream 1007175 23793680 ~ 23834851 (+)
LOC113540163 NA other downstream 1268649 24055154 ~ 24057898 (+)

Expression


Co-expression Network