G51276


Basic Information

Item Value
gene id G51276
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 22605547 ~ 22608037 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU60626
GTTAAtcttgttttaatacattacttTTATTCTAAATTTTCTCTGTACAGCAACCCTATAAATACAAAGTCCACGTCAAAGACAAAATAATGAGCACATAGATATCCATAATCTCACACCCACAGTTCCTCCATGTAGTCTAAGGAGGAGTACATGACAGTTAAAAGaaaactgatataaaaaaaaattgcacaaagGAATTCATAAATACATGATCGGTGCATTTCTGCATCAAGAAACTGCTCATACTAAATTAATTTCTGCCCAAAGTAGAAAGTACAATAAGGAAATTGaccaattatattatatttttctgcttgaaaaaaaaaaaaaaaactcttagtCCTCATGTTTCATATCTGCAGTATTAATCAAAGTTGGGATTTTGGAAATGAATTAAGAAGTTGACAAACAATATGTAAAAATCTTTTAGaccaataaacattttttttttctttgatcaaataataataccaaggggaaaaaaaaaacccacagccagttttacagatttcattttcagtggacCTCCAAGATCTGCAGAAATTCTGCAGAATATCTGctgcaaattttaaatttacagtataagcaggtttatttagaaataattaaTGGTGGATTTAGAATTCTCTCAAAGATGTCTGCCCAATCAAACATGTTCTTTTAGAATAAATGATACCAAGGTTTATCAGCCAGAAACGATAACTATGTGTGTAAACTAGAGAAATATTAGGAATCTTTAGCTAGAATGACTAATTAAATAACACTGTCTAACAGTGTCTCAATTTTCAGTTACAACTCCATATTTTTAAtccaattaaatttaaattaaagattACTATCTATTGAAGGTGCAGGGTACAGGATTCTTCTAATTTCCCAATAGCtttaatatcataataaataGCGTTGTCCTAACAAGAATCATATTTGCAAGAGTAGCTTCTGTTATTTTTAAGGTATTTCTCACAAATTCACACAGTTAGAAAAAGCCCAATAGTAGACATGAAATGGTGTTTATAAAACTGGTAAATTGCAGGTGAAATAAAATTCACCTGTTACAAAGTTCTAGCCCctactttaaactttaaatgaaTAAGTGCATGTGGTGATGCATCACTCACATGAGGCAAAGTTCAGGGCACTTTACTTACATTAATGAGTCTTTAGTGTTGCCATTTTATACAAACAATTGTGTGTCCCATGCCAATAATGGCAACTTAGAGCAAATTTTCCTGTTGCCTAACAAGGTTTTCAACAGCAGATGATCTCAGGGAACTTATAGTTAAGACCCATGTGCAGTGATGATAGGGAATGGTTTGGCAAACCTTTTTTGTCTAAGCCTACTCGGGTCAAGATCAAATTATACCACCACATGACCATAACTTATGTCGGTCATCGTGTCATATGTGTTGTATTTAACTGATAGCTGGACTGACTCCTAGCTGAGGTGCTAGATACGAACTCCCTTTGTTACTCTCCTGTGCCCAGTTCATTTACTCCCAAACCCGTTTCCTTGTCCAAAGAGAAAAGCATCAGAACAAGTGATTACTGCGAGTGTATGATTGCAGCCACAGATTTCACTGTGGAATTCACAACAACAGTGGCCACATTAGGGACATCTCTGGCCACTCTCTGAATGGGGGGAACATTGGGTCCTTCTAGGGTGTCCAGGAtacTTCAACAATCTTGTGATAGGCGAAATGCAGGTAGAGCAGGAAAAGCATGTGGAGTGCTGCCAGTGTGCCACACAAAATGAGACGAGGAGTTTTACCCACAGTACGGGAAATCAGCACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60626 True 1798 lncRNA 0.35 2 22605547 22608037

Neighbor

gene id symbol gene type direction distance location
ncoa4 ncoa4 coding downstream 7348 22589052 ~ 22598199 (-)
prkn park2 coding downstream 181136 22317419 ~ 22424411 (-)
LOC113538327 LOC108263699,LOC108420514 coding downstream 288168 22300917 ~ 22317379 (-)
ubr2 ubr2 coding downstream 306185 22266696 ~ 22299362 (-)
pkdcca pkdcc coding downstream 400572 22180147 ~ 22204975 (-)
tjap1 tjap1,LOC107728071,LOC107559778 coding upstream 18597 22626634 ~ 22689305 (-)
LOC113540869 dnph1 coding upstream 118869 22726906 ~ 22729307 (-)
LOC113540936 dnph1 coding upstream 130171 22738208 ~ 22742475 (-)
ppp2r5d ppp2r5d,LOC106605890 coding upstream 138697 22746734 ~ 22771957 (-)
si:dkeyp-121d4.3 LOC108263047 coding upstream 183146 22791183 ~ 22814948 (-)
G51169 qki,LOC107739475,LOC107565601,LOC107669572 non-coding downstream 59057 22544227 ~ 22546490 (-)
G51058 NA non-coding downstream 412631 22107092 ~ 22192916 (-)
LOC117596869 NA non-coding downstream 428216 22165739 ~ 22177331 (-)
LOC113538981 NA non-coding downstream 441123 22153348 ~ 22164424 (-)
G51053 NA non-coding downstream 546226 22058153 ~ 22059321 (-)
G51289 mea1 non-coding upstream 39313 22647350 ~ 22743272 (-)
G51389 NA non-coding upstream 282022 22890059 ~ 22890274 (-)
G51390 NA non-coding upstream 282260 22890297 ~ 22890507 (-)
G51462 NA non-coding upstream 462306 23070343 ~ 23070721 (-)
LOC113539667 NA non-coding upstream 607811 23215848 ~ 23218757 (-)
LOC113541574 LOC108263228 other downstream 33679 22565771 ~ 22571868 (-)
LOC113540944 eml4,LOC107586470,LOC107698167 other downstream 481898 22035285 ~ 22123649 (-)
G50837 NA other downstream 655358 21949855 ~ 21950189 (-)
plekhh2 plekhh2 other downstream 960035 21611663 ~ 21645512 (-)
prkceb prkceb,prkce,LOC108263296,LOC108422423,LOC107699301,LOC107727364,LOC107708403 other downstream 1126842 21387743 ~ 21478705 (-)
znf318 znf318 other upstream 166318 22774355 ~ 22788804 (-)
G51576 NA other upstream 839871 23447908 ~ 23454217 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other upstream 1408859 24016896 ~ 24040100 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other upstream 1500314 24108351 ~ 24132483 (-)
lyst lyst,LOC107569426 other upstream 1843949 24451986 ~ 24651847 (-)

Expression


Co-expression Network