G51425


Basic Information

Item Value
gene id G51425
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 23072956 ~ 23145137 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU60805
GAACCTCAGTGAAATTTGATAAAGCTcatgtgtaaaatgttttcttgttttgctAAAGCATCCTGTCTCCTGTCTTTTAAtgcacatttcattattttccctGTGCATGTAGACTGTATGTGCAGGGCTTGGATGTAAGGCTTGGTTCTGGGCTTCTCGTCAGGCCTTTCTGAGCTCCAGACTGATTTACCTGACTCGTGCATACAGCGCGCAGCTATCGCGAGAACTTACGGCTAAGTTTCTAAAAGCAGAAAATTGAGGCCTCAGTGTTGAATGAACGCAGTTTTGTCCTACGGAAGAGGGCAGAGggagggttttttgttttgtttttttttcctctctccacgCTTGACGCTGCTCTCATTCATAAAAGAGCTGAAGCGCCAGGCCGCGCTCCATTCAGCAGGCTGCACAGGCTCAGCGTCCACAGACACGCACTAGCCGCTAATAAATAATGCGACTAAATCATGTACTGTTTTGCCTCCTACTTCGTACCACAGTATTCGGTTTGGGACACGGCCATCCATCTGGCTCGCGTGAGATATTTTGGATCAAGTTTGATTTTCTGAAGCGACTGGAAACACGCTATTTAAAATACTGAGCACCTAAATAtcatcaaatatatatatatatatctttttgtTTAATTCCTTGAGCATTACAGACAAGCAGTTAATTGAAAGAGTTAAGCTAGCTTCCTGTGTGCTGGCTGTGGGAAAGCAGTAAGCTATAGGATAAAGGTTAGCTCTGAGTGCTGTGCTAGCCAGTAGCTGTATACTCGCTACATCAGTTAGCATTCAACTAACtcgtttaataaaaataaaaaacattattttaaaccCCGTGTAACACTGAAATTGGGTGATATACCTCACCACACTGTCACACAGTTGAGCATGGACAGACATACCCAGTGGCTAGCCATGTCACTGTGTTCATCCTGGCAGCATTTGCACAACACAAACATGTGCTCGGTTTGGCCCAGAGGAAGACCACGATGAAGAAATGGCACTCAGCTAAAGGTCAATGTAGCCATGGGCAATCCTGCACAGCAAGAATCGATTTCACATCCTCATTTTCAGTGTGACTCACAGGGCCAGGCTCTgctttcaattaaattttaactttttacaGCTGTACAAACCTTGTGACTGTGCTAAATAGTCTCAGTGAATGTCCTTTAACAGTATAAAACCTGTAGAGTTACAGAGTTAATGACTAATACAGTATGCATCAGTTTAGCAGAAATATGGAAATGGGCTTTAATCCCCTGTACAGCTTTTGTGACAGTAATGTACACCTCAGACAGAAGCGTACACTTCAGGAATTAATTTGACCCACAAAGATTTCTGTCAACCAGTTATTTCATCTCAGCATTGTTTTTAATACGTGCTAGTGTTCGACATCTCAGCCACATGAGGAACACAGTGGAAGGTGGTTTGAGAAGTGATATGTGTTATGCCTCTTTCATTGATTTAAGATGTGCACTGATGATCACTTCATTTTCTGTAAGAGGATACAtggctggtgttttttttttttttttttggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60805 True 1551 lncRNA 0.42 2 23072956 23145137

Neighbor

gene id symbol gene type direction distance location
actr2b actr2,LOC108423375,LOC104930021,LOC107660226,LOC105008543 coding upstream 3312 23052228 ~ 23069644 (+)
dld dll1,dld,LOC107717858,LOC107702673,LOC107660228 coding upstream 86159 22981602 ~ 22986797 (+)
si:zfos-1056e6.1 LOC108263310 coding upstream 145406 22924521 ~ 22927550 (+)
LOC113540824 syndig1,LOC107717853 coding upstream 182087 22870890 ~ 22890869 (+)
mea1 mea1 coding upstream 327152 22742727 ~ 22745804 (+)
meis1b meis1,meis1b,LOC108423396,LOC107582672,LOC107660223,LOC108263472,LOC106613898,LOC101073206,LOC103387108,LOC107551348 coding downstream 74984 23220121 ~ 23276316 (+)
si:dkey-78p8.1 NA coding downstream 282880 23428017 ~ 23450991 (+)
lrrfip2 lrrfip2,LOC107679173 coding downstream 723014 23868151 ~ 23999400 (+)
LOC117596572 NA coding downstream 988486 24133623 ~ 24136847 (+)
ggps1 ggps1,LOC107728322 coding downstream 1171566 24316703 ~ 24345368 (+)
G51422 NA non-coding upstream 2243 23070321 ~ 23070713 (+)
G51358 NA non-coding upstream 114336 22958400 ~ 22958620 (+)
LOC117596907 NA non-coding upstream 336289 22729322 ~ 22736667 (+)
G51161 NA non-coding upstream 536519 22534338 ~ 22536437 (+)
LOC113539127 NA non-coding upstream 623447 22424419 ~ 22449509 (+)
G51501 NA non-coding downstream 61978 23207115 ~ 23275341 (+)
G51511 NA non-coding downstream 132786 23277923 ~ 23361488 (+)
G51564 NA non-coding downstream 311872 23457009 ~ 23457309 (+)
G51561 NA non-coding downstream 314476 23459613 ~ 23460865 (+)
G51565 NA non-coding downstream 319116 23464253 ~ 23465415 (+)
LOC113540861 LOC108263311 other upstream 159404 22911144 ~ 22913552 (+)
G51271 znf318 other upstream 286451 22784328 ~ 22786505 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other upstream 520204 22485310 ~ 22552752 (+)
wu:fj16a03 NA other upstream 1049145 22020322 ~ 22023811 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other upstream 1953992 21025733 ~ 21118964 (+)
G51562 NA other downstream 309291 23454428 ~ 23455549 (+)
G51749 NA other downstream 551895 23697032 ~ 23697294 (+)
slc29a3 slc29a3 other downstream 648543 23793680 ~ 23834851 (+)
LOC113540163 NA other downstream 910017 24055154 ~ 24057898 (+)
b3galnt2 b3galnt2 other downstream 1205047 24350184 ~ 24402454 (+)

Expression


Co-expression Network