G51501



Basic Information


Item Value
gene id G51501
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 23207115 ~ 23275341 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU60889
cgtgtgtgtgtgtgtgtgtgtgtgtgagattgtgtttgtgtgtttgggtggATGTGTATGAAAGCATCtgagagtgtgcatgtgtgtatatgttacTTGTGAGAAAGTGTTTCCTCCTCATGAAGCCATATTTTGGGGGGGTGGTTGTTGTGTGTGCATTGTTGCTGTTCCTTTGTTTCTGAGCTTGgggatgtactgtatgtggcagctctgtggctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatataatttgtgaCCCTTTGTAGAGCTTGAACCTGGAAGGGTTCCAGCCACAATGTATTTTCTCAAAGCTACGTGTTTGAAGATTGGAATCAAATATGACTGATGACCCCAAAAGAGCTCAGGTCATTCTTATAAGCAGAAATAGCACTGCCTAACATACACATTTAGAAATCAGGGCAAACACGTGGTCATCCAAAAGCTGTTAAGTGAGCAGTGCTGGTTAATGAAATGATCAGCAAGCTCCTTCGGGTTTTTGCAGAGCTGCTAAGGGGCCAGTGGCCTTTTATGCTAGTGACACACTTGCGCACATCCAGGTAAATCCTCTCAAGTGACTCTCATTGTCAATTTTCACTTTTCCTCTTTAATTTGAGCACAATGGCGCTATTTCTCAAAGGGAGCTTCAGACTGAACCACAGACCTTTGCTTATTATGTTTAAAGAGAGATAAGTGGAGGTGGTGCAGAGCATTAATGCATGCCATATTTTAGATTGTCATATTTGTCAGTGCTATGAATGCTTTCACTGAAAAGAAAACGTGTATGATTCAGTGAAGCTAAGTGTACCATGAAACCTGAGgaacctgtttgttttttttttttctttgctcacATGCTCAATAGTCTCAGGAATTCTTTACACTACTTCTAAGTAATAACACAGTAATGTGCCAGACTGTAAAATGCTCTCACTGATACATATTCCTGCAGAAATATGATACCTTGTGCCTTTCAATCAGATATTCAATAAAATACATGTAACATGTAGGCACTTGATATGCAGGTCTATCCCACAGGGAGTGTAATTATGTGAATTTAGCCCATGTATTCTTCTTTACCATGAACACAAGATGATACATGTCATCCTTTTGGCTGAACGTCATGCAGGGCAGCCTTCTAGTTCACTAGACCTGTATTAATGTGATTGTGGCCAGGCTGGATGAATATTGTGCTTGGGACAGCTCCGTGAGTGATGTGCTATGTCCAGTGAGCTAGTCCCTAGAGACAGATGCACACCAACTGCATGAACTCTCTCATTCTATTGTCCTCATTTGTGTCTGAAGATAACATTTTCCACAACCCTATTCTTATGATATAATAATGAGTCCATTACTGAGATACCAAAATATATAGAGTAATTTTATTGTTTGC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU60889 True 1397 lncRNA 0.41 3 23207115 23275341

Neighbor


gene id symbol gene type direction distance location
LOC113545030 NA coding upstream 92076 23114185 ~ 23115039 (+)
spred2b spred2,LOC108263653 coding upstream 105981 23071308 ~ 23101134 (+)
actr2b actr2,LOC108423375,LOC104930021,LOC107660226,LOC105008543 coding upstream 137471 23052228 ~ 23069644 (+)
dld dll1,dld,LOC107717858,LOC107702673,LOC107660228 coding upstream 220318 22981602 ~ 22986797 (+)
si:zfos-1056e6.1 LOC108263310 coding upstream 279565 22924521 ~ 22927550 (+)
si:dkey-78p8.1 NA coding downstream 152676 23428017 ~ 23450991 (+)
lrrfip2 lrrfip2,LOC107679173 coding downstream 592810 23868151 ~ 23999400 (+)
LOC117596572 NA coding downstream 858282 24133623 ~ 24136847 (+)
ggps1 ggps1,LOC107728322 coding downstream 1041362 24316703 ~ 24345368 (+)
cacul1 cacul1 coding downstream 1141149 24416490 ~ 24440455 (+)
G51425 NA non-coding upstream 61978 23072956 ~ 23145137 (+)
G51426 NA non-coding upstream 130644 23074730 ~ 23076471 (+)
G51422 NA non-coding upstream 136402 23070321 ~ 23070713 (+)
G51358 NA non-coding upstream 248495 22958400 ~ 22958620 (+)
LOC117596907 NA non-coding upstream 470448 22729322 ~ 22736667 (+)
G51511 NA non-coding downstream 2582 23277923 ~ 23361488 (+)
G51564 NA non-coding downstream 181668 23457009 ~ 23457309 (+)
G51561 NA non-coding downstream 184272 23459613 ~ 23460865 (+)
G51565 NA non-coding downstream 188912 23464253 ~ 23465415 (+)
G51568 NA non-coding downstream 199587 23474928 ~ 23475797 (+)
LOC113540861 LOC108263311 other upstream 293563 22911144 ~ 22913552 (+)
G51271 znf318 other upstream 420610 22784328 ~ 22786505 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other upstream 654363 22485310 ~ 22552752 (+)
wu:fj16a03 NA other upstream 1183304 22020322 ~ 22023811 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107602502,LOC107666367,LOC107711417 other upstream 2088151 21025733 ~ 21118964 (+)
G51562 NA other downstream 179087 23454428 ~ 23455549 (+)
G51749 NA other downstream 421691 23697032 ~ 23697294 (+)
slc29a3 slc29a3 other downstream 518339 23793680 ~ 23834851 (+)
LOC113540163 NA other downstream 779813 24055154 ~ 24057898 (+)
b3galnt2 b3galnt2 other downstream 1074843 24350184 ~ 24402454 (+)

Expression



Co-expression Network