G51523


Basic Information

Item Value
gene id G51523
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 23260196 ~ 23266336 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU60916
gacagagacacataGGCAAACTGATAGTGTGGCTGAGGAGTGTAGTGAGGAATGCTTAGCTTTCATTTCAGTAGAAGGCTCACTTATTGGCCTATATGAAGCTTGTTATTAGTGCTCTGAGCTATTAAAAAAGCTGTTGAATGATTGCTATTTAGataggtaggtagatagatagatagttatatagatcagagagagagagagagagagagagagagaaggtctTGCACTCCCTTGGAGCTGGGGAATATGAGGTCATTTTTGGCAGCTTGTGGTCAGCTTGCTCTCGCACCCCAGcctagagagagtgagagagagagcatctcATCTCACTTCACATATTTAACTTCAGAATGTGTGCTGCGTCTGTTCATCTCTGGCTTTTGAGGCCTTGTCTCTGGTGCCCCTAAGTCAATTGGGCCAAGGAGCATGTCCTCTCTGTCCggacaaaacacacagagagcagcAATGTAGGctggcagcagtgtgtgtggtagCACAAAGCTCATTACATCAGCGTATGAGGAAGAAGATATGACTGCACGGCAACGTGTTTTACGCCTCTTATTACTATGATTTCCATCAGGTCCTTTAGCACTGGCACTGCCATCTCTAGCTGTCACCCCAGCAATACACTCAATCGACCAATCTGTAAGCAAGCAGCCagataaaaaatgtaaacttgAACTTACTTATGGACATATATGTagttttttcaggtttttcagtataaaaaaattgaaagaagTCAATGACACTTCTctgaaaataaccaaaaaataaGGACTGCATGAGATTGTCTGACAAAGTCAGGTTTCTGAcaaatatgcttttattaaGATACAAAaccttaatgaaaatgaaattgtatTCTTTTCAATTCTTGAAATTGCATTCTTTTGACAATTCTTGATATGGACACAAAAACAGAAGTAAAAACCAAGCCAATGTTTTCATACATGGCACTGCATATCCACTCTCAAACGTTCATATGTAGAAgaaagagataaacagagaaagagagaaatgatggAAAATATAGGCTGTGTCTTGGGCTCACTGTGATGTAAGATGGGGGGAGGAAGAGTTGAACCATTGTATGGTTCACAGACTCTgttcaaatgcacacacacacacagccacagagctgccacatacagtacatcccCAAGCTCAGAAACAAAGGAACAGCAACAATGCACACACAACAACCACCCCCCCAAAATATGGCTTCATGAGGAGGAAACACTTTCTCACAAgtaacatatacacacatgcacactctcaGATGCTTTCATACACATccacccaaacacacaaacacaatctcaTACACACAGAACCACTCCAACTTGTCTGTTGTTGACATAACGCAGATAGAGATCAGGTCTGAGCAAGTGCAGAAATTCCAGTATGGCACAATTGTTAGCAAACACTCAAGAACTGATTGAGCCCAAATGAGGAGAAggacaaacaataaaaatacagagcCTCATCAATCTGCACTGGCTGACGTTCCTGAAGTTCATGGGGCGAGGCGAGTGTGTggcagtgtgtttatgtggtgaGAAGGGGTAAATATGGCTTTTGTTCAGCAGGGTGACCCCAGGTAGAGCTGGTGTTTCAGTGAAAAGCCACAGAGATTCATGGAAAAGCACATTTACAGCATGGCGCTATGAAAGCTGCTTTAGGGcatacacatactacacacacacacctcatttacaGCCCTGTAAAATCTCCTGtgggtcacacacacatgcaatgaGCACACAATCAGTGTCTAACGTGTGAAAACACCTAATCTAGAATCACCCGAAAACTCTAAACCCACATAAACAACCACTACAACAGTGTAACAATCATTAGAGATACACGCTAGATCAGAGGTCACGTTTTTCCACCAAGGCTAAAGAGCACTGCCAATGAATACACATTCTGAGCATGGAGCAATCAGCAATAGCTTACTCTGAACAAGTTTCAACTGCTTTTATCATAAGCAGGCCTGGCTGTTAGCAAGGTGAAGCATGCcaatcatctctctctgtctctctctctctttctctctctctctctctctctctctctctctctgtcattctctcagGCAGAGAAACCGGATCCCAGGACGCTATTTCTCTAAAGTAGCGCCGCCACACTTCTCGCCATGCTTTTAAGACTTTCATAAAAGCCGTCTTATTGACAAAACAATCCATCCCTGAGGTTTAAACACCATCTTTAAGGGCATTATTAAATTCCGCCAGGAAGGGAGGACTGGACATGCGAAACCCGATGACCCGCCCATTGATTTCACATCAGCGCTCTTTATGGAGCATTCTGAGAACACACACTTGCTCTGTTATCATCAGAGACTAAaactccttttccttttctctctgtctctcccttcttttctctttcttcctctctctctcttgttacTGTAATGGATCTACAGGTCTTTTTCACTGTACTTTCTGTAACATAACACAATATCTCAGTATATCAACCTGAGCACAGTTGCCAAAAATAGATGTTGTAGTCAATCCACAATCTCCACCCACTGCTTGCCTGTTTCAGCTTAACAATGTGTGCTCACGcatgtgtttctgtttcagtgCTCATATGAGCATAACACTGTGTGCATGGGTGTGAATAAAAGTACATCTTTGCCATGTGTTTTCATCTATGTGcttttttattcagattttccCATGCAGATTTGCATCTAGAGTGCCATTGTGGGAGCAACtgtttttcaaatttaaatatCCAGTTTGAAATCGCCCCGAAAGCCATGCTTGAAACAATAATTCCTGAGTGCACACCCTCCCCTgctttagcatttttatttaatcccCAGCTTGCCGATCCACAGGGCCCTCATCAATAATGAAGCATTACATGTGTGTTAACAAGTCTACAGCAGCATAGCTGATCTCTTCTTTACCCCCACATAGTTAATTGGTTTGAATATGAGGACAGCACTGAATGCACTGATTGTGACCATAAATCACCTAACTAGTTTCTAATGAGACAGGCTgaaaaataagtgaataaaatgtgcatgtttgtgAAAGGAGATAATGTTGGTTTAATCTAGAGTGGCTGCTGTTGCTTGCTCCGTTTGATGAATTTCATCACTCTGGTTTTGGAGTGCTCAGCGCTGTGTTGGCCCTGTGTTTTGACTTGCCTGATAAATAGAATCCCAGCTCAGGATGTTGCCTTTAAAATCAGTGGGTCAGGAGGTAACATCACGAGGGGTTGCCATGGAGACGCCCAATGGTGAGATTCCTACCATGCACTACAGGCCTATGGAGCTGCAGATCCCGCATACTACCccatggagtgtgtgtatatctatctctccttccttctctctccctccctctttttctcctaAGATACTTTCCACATTTCCCCAGTTCCCTTAGACACATATAagcacattaaaacacacacactcactgtagaAAACAATGTGTGTAGGGCACAAACATCTTAGCATGCAGGGTTTAGCATTAAACCCTAGCCTTTAACCACCCCTGACTCATCATTAATAACACAAATGTGACACAATAACGCACATACATGCTCAGTTTGCACTGCTACAATTCCACTATCAGCCCTGCCACACAAGAACTGGTTAAATGAGGAACATAGTCATGTGACAACCTGTTCTCCAGGGCATAATGTGGCCAAAAGAATTTCCCATGGGTTACTGTGAGGTCACAGAAATTGATAACCTCAACAATATTCCCTGGTGTTATTCAGACTGTGCATCACCAATACTGGATTTGCGAAAATTAATCCGCTGAAGGCGTATATTGCGAGTAGGCTGTTGTCTCCAAGGTACCAAATTGAACAATGGCACGGATTATGTTGTCAGAAATTACATTTGCCCTAATGGGCTTTAATATGTCTCCCATATTTCCAGTCTAGGCTGATGTCCACATCCAGCGATGGCCTGTTAAACACAGGCTCTGCCTACATCAAGGCCAATTGATTCAACAAAACAGATTAGAGCATATTAATCTCTTAGCTTTATAGAATATGTAATAAAAGCTATCACACAGGCTGGGTGAGACTTTCATGTTGTGACCTGGCAACCTTGTGGAACATAAATGTGTGGCATTGGTTTTTACAAGACTGCTATCAAAAGTGCCAGTCTGAACCTGGTTTCAGTGGCCTCCCCCACCTCTCTTGGGCCATTCGTTAGACACAGCTAATAATGGTAAGTACGTGCTGATGGCTATCTCCAATGAAATGTGACCTGGGATGAAATCTCACTCCAAATTTATTGGGACTCCAGCAATGGGAACCGAGGAATCACAGGAGGTAGTTAACTGTGTGTCCCATGCAAGTGTGCAGTACAGGCTAGGTTTTGGAATAGGATTTAGAGAGACATGCGAGGTTCACTTCTCAAGGGAATTGCTATTAGGTTCACACTCAGAACATTGACGCATTGTCTCTTGAGAAATCCTAGAGCTATCTTATTGGGTGGATTGATGTGCAGGCAGATGAGGTAGTAAGGGGAAGGGAGGTCAGGCTTTGGGACTGGGCGGACTATTAATTCAAATAATTAGACACTGCTTGCCAGAGGCAAGGCTATtgtttgcatgtaaacacaaaaaGTACAATTGACTTACCAGTTGTTCACTTGTAGTATGGTAAGGCCAGTGTCTTGGGCCAGctgttttttctgttcttctgaGGGGTAGTTATTTCAGTGCAGTGCCCCTTAGCTGTGCTGCCATGAATACGGAATATGAAATAGAGATTTCTAAACACATCTTCTCCATGGAATAGAGGGTATCCATTTCTCACTGTTTGAGTACCACCAATAACACCTGTATGTAAATCTCTGCCGGATATGATGTGCCAACTGTCCTTTTGTAATCAGTCTTGTCCTTTAATAGCAGTTGACGGCAGTCTTTAATCTTTGGGTTCCCAAGTAGTACAATGAAAAAGTGTTATCTTATCTCCTATCATCCGGAGATCACAAATTGAGTCCCAACAATGGCACAGCCATATTCTCTCACCCCTGTCATGGCAATCATGGGTCGCTCATGCATGGCAGTCTGGGAGCTCATGCTTGTAGAATATGGCAGATAGAGTTTtcttccaagtgtgttacgctgcactGTGACGCTGCATGTTTGGCAGTTTGGTAGATGTCATGTGAATGGGGAGAGTTAACTAGTGGGTGGGCACTAGCATGACCAAAGAAAATGGGGGAACCTCCTccccctaaaaaaaaacaaaaaactttaatCTTTGTTGTGGTGGACCTGAGTGGAACCTGGTGACTAGAAGACTAATCCACATTTGGCTTAGAAGACGACAGTCTCTGTGGGGCTTTTAAAATGGTAAGAGTAGACAAGAGTGTCCCCAGTAAAGTTATGctacagagacagggagaggaCCTGCTTTGTATAGCATCACTTAAAAATGACCTCTCCTGCATTCATGTGTCCCTTACTCCTCAGTATTCAACACAATACCCCTGGTCTCAGAATAATGTCTTGTAGAATGTTCATAGACTGTAATATTAACTATTTGGAACTTTATATATGAGTTAGCTAGCATATTCTCACACTTTGCTATCATGAGAACATGTGGGTCACTGGGTAGCCCCATGCTTCACTGGTAGATCAGCATCTCTAAACCCATTACTAGTGCCTGAGCTTGCCATGGATTAAACCATATCAAGTGCTTAAACTGGACTAGAAGGTGTGGACTCATCAACACAACTTGAAGTCTCTAGTACAAAAATTAATACTCCAGAGTGCCCTGTGAAACAATACTTGCCTGTACTGTACAACACACCTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60916 True 5834 lncRNA 0.43 2 23260196 23266336

Neighbor

gene id symbol gene type direction distance location
phf10 phf10,LOC106589650 coding downstream 211072 23032198 ~ 23049124 (-)
fam120b fam120b coding downstream 282553 22964720 ~ 22977643 (-)
ppm1g ppm1g,LOC107660231,LOC107717838,LOC107702697,LOC107754752 coding downstream 325335 22927645 ~ 22934861 (-)
apmap apmap,LOC107702698,LOC107717839,LOC107564208,LOC107559784 coding downstream 336456 22913819 ~ 22923740 (-)
LOC113540882 cul9 coding downstream 393753 22826230 ~ 22866443 (-)
c1d c1d coding upstream 406083 23672419 ~ 23679981 (-)
kifc1 kifc1,LOC108261151,LOC108261048,LOC108261613 coding upstream 460816 23727152 ~ 23750761 (-)
mgme1 mgme1 coding upstream 571603 23837939 ~ 23840860 (-)
mrpl14 mrpl14,LOC102799944 coding upstream 596383 23862719 ~ 23867530 (-)
arid4b arid4b,LOC107690809,LOC102789854 coding upstream 924082 24190418 ~ 24316428 (-)
LOC113539667 NA non-coding downstream 41439 23215848 ~ 23218757 (-)
G51462 NA non-coding downstream 189475 23070343 ~ 23070721 (-)
G51390 NA non-coding downstream 369689 22890297 ~ 22890507 (-)
G51389 NA non-coding downstream 369922 22890059 ~ 22890274 (-)
G51289 mea1 non-coding downstream 516924 22647350 ~ 22743272 (-)
G51557 NA non-coding upstream 147344 23413680 ~ 23413941 (-)
G51577 NA non-coding upstream 191164 23457500 ~ 23457991 (-)
G51579 NA non-coding upstream 200610 23466946 ~ 23470699 (-)
G51580 NA non-coding upstream 205331 23471667 ~ 23472219 (-)
G51581 NA non-coding upstream 205963 23472299 ~ 23474091 (-)
znf318 znf318 other downstream 471392 22774355 ~ 22788804 (-)
LOC113541574 LOC108263228 other downstream 688328 22565771 ~ 22571868 (-)
LOC113540944 eml4,LOC107586470,LOC107698167 other downstream 1136547 22035285 ~ 22123649 (-)
G50837 NA other downstream 1310007 21949855 ~ 21950189 (-)
plekhh2 plekhh2 other downstream 1614684 21611663 ~ 21645512 (-)
G51576 NA other upstream 181572 23447908 ~ 23454217 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other upstream 750560 24016896 ~ 24040100 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other upstream 842015 24108351 ~ 24132483 (-)
lyst lyst,LOC107569426 other upstream 1185650 24451986 ~ 24651847 (-)
herc4 herc4,LOC107689351 other upstream 1395649 24661985 ~ 24735888 (-)

Expression


Co-expression Network