G51565


Basic Information

Item Value
gene id G51565
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 23464253 ~ 23465415 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU60965
agctaccttatctagcgagttgcagaacgatgattctaagcattcagttgcctggtcaagttctttgggatcagacggtgatccaatcatggttagtaaatctgggagattactgataaaactctgtgcagttgttgacgtgaaagtacgtttgacatggtgacgtggcaaggtgcatatattataattaagacacattttaaatgagatgaggtaatgatctgagatagcttcagactgtggaaataaGACTATATTTTcgatatttaatccgaatgttagtattaaatcaagagtgtgacaaCCACTATGAGTgagtcctattacattctgattaacccttACTGAATCAAgcatggacacaactgctgttctcagagggtcttctggattatcgaagtgaatattaaagtctccaacaattaatgctttgtctaaagaaacaaccaggttagagatgaaatccgcaaattcacataggaattccgaatatggcctagattatcattatagatgactgcgacgcctcctcctttgccagttagacggggctgatgtatgtaactgtacccaagaggactagcttcatttaatgctacaaagtcgtttggtttaatccacatttctgttaaacacagcacatcaaactcctgatcagtaatggtttcattaacaataagcgctttagctgcaagagatctaatattcaacagtcctagcttcagatcaatggtgctggctatgcatttggtttgatttaattttatgttaattaggttactaaaacaaactaactgagtatgtctataattctgtttagcttggggaacagacacagtctcaatacggtggaacctaagtgacaactcagtgcagctagcagatggtcggtttagcctgcttgtctgctccctggccttggctctgtattgtcaccgattaactaggcctgttctgagactatgtgctatgctgcaagaaatgagagcagcaccttcccgagtgggatggacaccatCCCGTCCTAataggccagccttgccctcaaagatagtccaactatctataaagcccacattgttttcggagcaccacatGGACATCCAGCAggtcagcgaccataacctgctgtaagctacatcgccacgccgcattgggatggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60965 True 1163 lncRNA 0.42 1 23464253 23465415

Neighbor

gene id symbol gene type direction distance location
si:dkey-78p8.1 NA coding upstream 13262 23428017 ~ 23450991 (+)
meis1b meis1,meis1b,LOC108423396,LOC107582672,LOC107660223,LOC108263472,LOC106613898,LOC101073206,LOC103387108,LOC107551348 coding upstream 187937 23220121 ~ 23276316 (+)
LOC113545030 NA coding upstream 349214 23114185 ~ 23115039 (+)
spred2b spred2,LOC108263653 coding upstream 363119 23071308 ~ 23101134 (+)
actr2b actr2,LOC108423375,LOC104930021,LOC107660226,LOC105008543 coding upstream 394609 23052228 ~ 23069644 (+)
lrrfip2 lrrfip2,LOC107679173 coding downstream 402736 23868151 ~ 23999400 (+)
LOC117596572 NA coding downstream 668208 24133623 ~ 24136847 (+)
ggps1 ggps1,LOC107728322 coding downstream 851288 24316703 ~ 24345368 (+)
cacul1 cacul1 coding downstream 951075 24416490 ~ 24440455 (+)
gpatch11 gpatch11 coding downstream 1717738 25183153 ~ 25191848 (+)
G51561 NA non-coding upstream 3388 23459613 ~ 23460865 (+)
G51564 NA non-coding upstream 6944 23457009 ~ 23457309 (+)
G51511 NA non-coding upstream 102765 23277923 ~ 23361488 (+)
G51501 NA non-coding upstream 188912 23207115 ~ 23275341 (+)
G51425 NA non-coding upstream 319116 23072956 ~ 23145137 (+)
G51568 NA non-coding downstream 9513 23474928 ~ 23475797 (+)
G51569 NA non-coding downstream 13629 23479044 ~ 23480048 (+)
G51570 NA non-coding downstream 19063 23484478 ~ 23484833 (+)
LOC117596653 NA non-coding downstream 147190 23612605 ~ 23616839 (+)
LOC113544527 NA non-coding downstream 174937 23640352 ~ 23651127 (+)
G51562 NA other upstream 8704 23454428 ~ 23455549 (+)
LOC113540861 LOC108263311 other upstream 550701 22911144 ~ 22913552 (+)
G51271 znf318 other upstream 677748 22784328 ~ 22786505 (+)
LOC113538739 qki,LOC107696379,LOC107559772,LOC106605787,LOC107739475 other upstream 911501 22485310 ~ 22552752 (+)
wu:fj16a03 NA other upstream 1440442 22020322 ~ 22023811 (+)
G51749 NA other downstream 231617 23697032 ~ 23697294 (+)
slc29a3 slc29a3 other downstream 328265 23793680 ~ 23834851 (+)
LOC113540163 NA other downstream 589739 24055154 ~ 24057898 (+)
b3galnt2 b3galnt2 other downstream 884769 24350184 ~ 24402454 (+)
golga4 golga4 other downstream 2096987 25562402 ~ 25594936 (+)

Expression


Co-expression Network