G51581


Basic Information

Item Value
gene id G51581
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 23472299 ~ 23474091 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU60984
gggagagccagaagctaacacagacatgaggccatgggacataaggcagccagccactccaccgtcgacaaacctgagtgaacgcgtgagagtgggggggcgacagcatccaaacatcccagttcaccacaacactctatgcctgtgaaccctccagaccctgcccctgtacctaagaaaaaaactattcacaaaaggcttgactaaacaaatatgttttcagcctagacaaacactgagactgtgtctgagtcccaaacactaagtggaaggctgttccataactgtggggctttgtaagagaaagctctacccccagttgtagccctcactattcgaggtaccaacaaatagcctgcaccttttgatctaagtaggcgtggcggatcataaaagaccaaaagtcaATTATAGGTCTATAGACTATTTATAAgtctttataggtcaatagtagtattttataatcaatacaaaatttgattgggagccaatgcagtgtggataagataggggtgatgtggtcatatcttctgattctagtaaggactcttgctgctgcattctggactaactggagcttgtttatgcatctactggaacatccagacagtacggcattacaataatccaaactagaggtaacaaaagaataaactaatttttctgcatcgtgtagtgacaatatatttcttatgttagcaatatttctgagatgaaagaaagcaatcctagtgatattatctacatgagcttcaaaagaaaaatctagagtcgataatcacaccaaggtcttttactgctgcacacgatgaaacagaaaggccatccagagttattatgtaatcagaaagcttatttCTAATTGCATAAGGTCCTAGTACAGAAATAAGTCTTGTCTTGTCAGAaataagtaagagaaagttaataagcatccagtttttaatgtcttttacccattcctcaactttattaagctggtgtctgtcatctggctttgctgaaacatacaaccgtgtgtcatcagcgtaacagtggaagctaataccatgtttaggaataattttgcccagaggtagcatatataaagaaaagagcagtgggaagagaagtcaccatttacgtttacaaactgataatgatcagtcaaataagacctgagccaggaaagggcctttcccttaatgcctactacattttctagtctatcaaggagaatagcatgatcaatggtatcaaaagctgcactaaggtcaagcagcacaagcaaggagacacaaccctgatcagaggccagcagtaagtcatttaccactttaaccagtgctgtctctgtgctatgatgaggcctaaatcctgactgatacataggaataacattcatgaaatgtaagtatgagcatagctgctgtgctacaaccttttctaggaccttggagataaaggggaggtttgatattggtctatagttagacagctgacaggggtcaaggtcaggttttttaatcaagggcttgataactgctaatttaaaagatttaggtacgtagccagtgctaagggaagaactgattatctttaaaagaagTTTAATTATTGCAGGAATTATATGTTTGAAGAAActagtaggtaaaggatctaggagtggagtggctggctgctttatgtcccagggtgccctcatgtctgtgttagcttctggctctcccttttagttatgctgtcatagctagtcttgccggagtccctgcttgcactctgcatgcaaagtacattgtgcttaaccattagaggac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU60984 True 1793 lncRNA 0.41 1 23472299 23474091

Neighbor

gene id symbol gene type direction distance location
phf10 phf10,LOC106589650 coding downstream 423175 23032198 ~ 23049124 (-)
fam120b fam120b coding downstream 494656 22964720 ~ 22977643 (-)
ppm1g ppm1g,LOC107660231,LOC107717838,LOC107702697,LOC107754752 coding downstream 537438 22927645 ~ 22934861 (-)
apmap apmap,LOC107702698,LOC107717839,LOC107564208,LOC107559784 coding downstream 548559 22913819 ~ 22923740 (-)
LOC113540882 cul9 coding downstream 605856 22826230 ~ 22866443 (-)
c1d c1d coding upstream 198328 23672419 ~ 23679981 (-)
kifc1 kifc1,LOC108261151,LOC108261048,LOC108261613 coding upstream 253061 23727152 ~ 23750761 (-)
mgme1 mgme1 coding upstream 363848 23837939 ~ 23840860 (-)
mrpl14 mrpl14,LOC102799944 coding upstream 388628 23862719 ~ 23867530 (-)
arid4b arid4b,LOC107690809,LOC102789854 coding upstream 716327 24190418 ~ 24316428 (-)
G51580 NA non-coding downstream 80 23471667 ~ 23472219 (-)
G51579 NA non-coding downstream 1600 23466946 ~ 23470699 (-)
G51577 NA non-coding downstream 14308 23457500 ~ 23457991 (-)
G51557 NA non-coding downstream 58358 23413680 ~ 23413941 (-)
G51523 NA non-coding downstream 205963 23260196 ~ 23266336 (-)
G51584 NA non-coding upstream 8032 23482123 ~ 23482354 (-)
G51600 NA non-coding upstream 34438 23508529 ~ 23508739 (-)
LOC113537953 NA non-coding upstream 194717 23668808 ~ 23672150 (-)
LOC117596832 NA non-coding upstream 212638 23686729 ~ 23687499 (-)
LOC113544646 NA non-coding upstream 213523 23687614 ~ 23715940 (-)
G51576 NA other downstream 18082 23447908 ~ 23454217 (-)
znf318 znf318 other downstream 683495 22774355 ~ 22788804 (-)
LOC113541574 LOC108263228 other downstream 900431 22565771 ~ 22571868 (-)
LOC113540944 eml4,LOC107586470,LOC107698167 other downstream 1348650 22035285 ~ 22123649 (-)
G50837 NA other downstream 1522110 21949855 ~ 21950189 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other upstream 542805 24016896 ~ 24040100 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other upstream 634260 24108351 ~ 24132483 (-)
lyst lyst,LOC107569426 other upstream 977895 24451986 ~ 24651847 (-)
herc4 herc4,LOC107689351 other upstream 1187894 24661985 ~ 24735888 (-)
LOC113542183 NA other upstream 2435927 25910018 ~ 25910119 (-)

Expression


Co-expression Network