LOC113545393 (ccdc85a,LOC107716311,LOC107585341)


Basic Information

Item Value
gene id LOC113545393
gene name ccdc85a,LOC107716311,LOC107585341
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 24108351 ~ 24132483 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU61381
CAGGAGCAGAAGAGCTGTCCCCACATCACCGGAGCATCTACAGTGGTATGAATGCTCTGCTATCTGCTGGCTGCTGCACCACCTCCTGTAGAAGTGTCAAGCTTTGGGACAGCTTTGATGCCTCCTGACCGTTGCCTTGACTGGATCCAGTGCTGGGTTCCTGGCTTTGTAGGAGCCCAGATCTCTGCTGTCTTTTGCACTGGGAGAGAGAGTGCACACTGTTGTGCAGcagccagtgtcttgtgtctttTCCACCCCATGCTGGTTTCAGGTGTCCTGTTCCCCTGTTAGAGCTctgcacaacaacaacaaaagtaaaaaaaaaaaaagaaaagaaaaaaaaattgaaaagggGTTTCATAGGAGGGAGAAGGCTAGAACCCCCTAACAAGAATTCTGTAATGGGAGATGAAAGATGCTCCCTACGTTGCCAACAAAGTAGACCTACCTCCTTGAAATGAAAGCAGTTAACAATGAGCATAAACGTGTGAAATGGGATTCAGAGGCTAACACCCTTCCTGTTTACAGATGCCATACACAACTTCATATGACCAATAAAGAAGTATTTCTATTTGGATCCACTAGTAAATTTAATTGGACTTGCTGTGTATcacaggaaattaaaaaaaagtattatcaTAGCGATCACTGCCTTGCTTCTGTTAAGAGCTTTGTGGCAACCATAAGTTcattattataacaatataaatcACATTATTAAACGTGGAGATGGTACAAACAAAACATTGCTCTTATCTGTCATCAACCAGTGACTGCTGATGAACCGTGTGTTAGATGAAGTGCGGAATAAATACGATTAATTTCTGGAAGCACAAAGCCAACCTTAAAATGCTCCCTCCCCTCTCAGTCAACATAAGTGGACCATTCTAGAGGGGTAAATATTTGACATGGCAaacattctcaaaaaaaaaaaaaaaaaaaacaaaaagcaaaaaagaacaaaagaaagaaattaaaaaaaacagtctccCACTCTTCCCATACTAAGTACCATCATGCCTTGCTTCTGCCCAGTTGTTTCTGTGAACTTCTGCTCTGATAGACAATagaacaaatgcacacacataaacacacatataaacacacacaaaacatatgcacattatattttatatgggAATAATGCTTCATGTGGGAGAACTGGacagcacacagttgtatacttgcatgtaagtgatttttggtAGCCCTTTATTTATTAGGCCTAGATCACAAGTCCTGTGTGCCAACCATTGATCCTCCAGTATAAATCAgtattacatacagtacaagcTACTTTGTAACCTCTTTGACCTgtgatcttttttatttttgttgagaAATTATATGAGAAAGAAc
>XM_034301784.1
AGATGGAGACATGACCGGAGAAACAAGAGGAAAGCACCACGATCTCTTCCTTAGAGAAGGGCTTTAGCCAGCTTGAGGAGGAGCAGACGGAGGACGAGTTCTTCCCGGCACTCTCAGGTTGCAGCTGCAGGTTTAAACGGAGCGCGTGCACAGCGCTGCTAGTCTCACTATGAGAGTCTCCTGATTCGGATCCAAGCAAATTTCTGCAGAGCGTCTGCGCCGGGCGGCTTGCGTCTTGTATCCACAGTTCGGCGGTAGCGGGGCGCTTTCTGTGCGCCACTGAGTTGGTGAAGGTGATGGAGAAGCCGGCACAAGCCCAGCTGCAGTCAGGTGCAGCCAAGAGCACGGAGAGCTGCACCGAGGATTTGTCCAAAGTCACGGATCAGGAGCTCATGAAGTGGAGTAAAGACGAGCTGGTGCGGCGGCTGCGCAGAGCCGAGGCCGAAAAGATGAGCGCCATAGTGGAGCACGGAAACCTGATCCGAGAGGTGAACCGCAGGCTCCAGCAGCACCTGAACGAGATCCGGGGACTGAAGGAGGTGAATCAGAAACTGCAAGAGGATAACCAGGAGTTGCGCGACCTTTGCTGCTTCTTGGACGATGATCGGCAGAAGGGGAAGAAAGTGTCAAGGGAGTGGCAGCCGCCGCTTACAGCTAGCAGGCATTATGCGTGGGAGGTGACCCTGTACCTGCAGAAActgaaggagctggagcagAGGCAGGAGGAGGTGCTGAAAGAAAACCTAGAGCTGAGGGAGCTGTGTCTCATGCTGGATGAGGAAAAAGGCTCTGGAGGCACAGGAGGCTTGCTGAGCACTGGAGGTCCAGCAGGCTGTAGGAACTCTATCGACAGCCAGAGCAGCCTGTCACATGCCAGTGTGCCCGGGCCAGGGCTGCTGAGGGACGTTGGGGATGGGAGTAGTACTTCCAGTGCAGGCAGCACTGACAGTCCTGATCATCTGACACACAAGCAGCAGCTGCTGGCTGGTCCAGCTGGAGGCAGTCTTGAGCATGTCCACAAACCGGCAGGGGAGGAGATGCCAGTTCCAGAGCAACTCAACCGCAGAAGGAGCACAAGTCCAGAGTATGCTGCCCACACCTTTCCTCAAGTGTGCCGGCCTCGCACAGGGTCCTTCTCTAGCCCCGATCACAAGGGCTTGCGAGGTCTCAGCCCGAAAAAGCGGCAAAGAGGCAGTCCAGAGCAGTTTCCAAAGCACTTGCCAGTGTCTTCTCAGCCTCCTGGTAGCCCTGACCTCTTTCAGAAGCACAGGACAAGCATCGGAAGCCTTTGTGGCAGTCCAGAGCCTAAGCAGATAATGTCAGGGACTCAACATCTGCAGAAGGGTCGTGTGATTGCAGGAAGCCCTGAGATGCTAAGGCACCAGTACAGTGGCAGTCCAGATCATGGCAAGTTTGGCAGCCCTGGGCGGATGTGGCACAAAGGGAGGTCAGGAGCAGAAGAGCTGTCCCCACATCACCGGAGCATCTACAGTGCTCTGCTATCTGCTGGCTGCTGCACCACCTCCTGTAGAAGTGTCAAGCTTTGGGACAGCTTTGATGCCTCCTGACCGTTGCCTTGACTGGATCCAGTGCTGGGTTCCTGGCTTTGTAGGAGCCCAGATCTCTGCTGTCTTTTGCACTGGGAGAGAGAGTGCACACTGTTGTGCAGcagcc

Function

symbol description
ccdc85a Predicted to be located in adherens junction. Orthologous to human CCDC85A (coiled-coil domain containing 85A).

NR:

description
PREDICTED: coiled-coil domain-containing protein 85A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61381 False 1359 lncRNA 0.40 3 24108351 24129851
XM_034301784.1 True 1674 mRNA 0.57 9 24109476 24132483

Neighbor

gene id symbol gene type direction distance location
mrpl14 mrpl14,LOC102799944 coding downstream 240821 23862719 ~ 23867530 (-)
mgme1 mgme1 coding downstream 267491 23837939 ~ 23840860 (-)
kifc1 kifc1,LOC108261151,LOC108261048,LOC108261613 coding downstream 357590 23727152 ~ 23750761 (-)
c1d c1d coding downstream 428370 23672419 ~ 23679981 (-)
phf10 phf10,LOC106589650 coding downstream 1059227 23032198 ~ 23049124 (-)
arid4b arid4b,LOC107690809,LOC102789854 coding upstream 57935 24190418 ~ 24316428 (-)
LOC113542016 sipa1l2 coding upstream 680491 24812974 ~ 25090822 (-)
dnajc12 dnajc12 coding upstream 1175823 25308306 ~ 25330202 (-)
msh6 msh6 coding upstream 1362193 25494676 ~ 25504756 (-)
LOC113541965 zc3h6,LOC102799538,LOC100704674 coding upstream 1553201 25685684 ~ 25697851 (-)
G51903 NA non-coding downstream 102666 24005388 ~ 24005685 (-)
G51887 NA non-coding downstream 162006 23944851 ~ 23946345 (-)
G51876 NA non-coding downstream 226016 23882027 ~ 23882335 (-)
G51781 NA non-coding downstream 383263 23724878 ~ 23725088 (-)
LOC113544646 NA non-coding downstream 392411 23687614 ~ 23715940 (-)
G51943 NA non-coding upstream 4023 24136506 ~ 24136795 (-)
LOC117596863 NA non-coding upstream 127869 24260352 ~ 24269139 (-)
G52097 NA non-coding upstream 254898 24387381 ~ 24392746 (-)
G52076 NA non-coding upstream 282836 24415319 ~ 24416426 (-)
G52147 NA non-coding upstream 416188 24548671 ~ 24605747 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other downstream 68251 24016896 ~ 24040100 (-)
G51576 NA other downstream 654134 23447908 ~ 23454217 (-)
znf318 znf318 other downstream 1319547 22774355 ~ 22788804 (-)
LOC113541574 LOC108263228 other downstream 1536483 22565771 ~ 22571868 (-)
LOC113540944 eml4,LOC107586470,LOC107698167 other downstream 1984702 22035285 ~ 22123649 (-)
lyst lyst,LOC107569426 other upstream 319503 24451986 ~ 24651847 (-)
herc4 herc4,LOC107689351 other upstream 529502 24661985 ~ 24735888 (-)
LOC113542183 NA other upstream 1777535 25910018 ~ 25910119 (-)
dst dst other upstream 2925414 27057897 ~ 27195955 (-)
zgc:163080 tmem14a other upstream 3405286 27537769 ~ 27541331 (-)

Expression


Co-expression Network