G51958 (arid4b)


Basic Information

Item Value
gene id G51958
gene name arid4b
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 24197021 ~ 24210304 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU61422
TTGGATTTCTGCTCACTCTCCTGCTGACTGCTGCTGCTTAAACTCAGGCTACAGCTGCTGTTGCTGGACAGGTTTGCATCAAAAGCTTTGGAGAGGGATTCTGACTGCTCTTCCTGAGGCAGTGTGTGAAACTCACAGCTCACAATATCCATCTCCACTGTACTAGTGTCAGACTCGCTGCGCCCACCAACACACTCTTCTGTCAAAGGCCCAGCTGGTGAGGATGTGGCTGGAGAGCAAGATGCCAGGACAGAACTCTGAGGGGGTGGTGAGGATGAGTGCATCTCACGCAAGACCTCAGCAGACTCTGGCGTGGTGGGTGGTGTGTTGAGGATGGAGTTGCTTCCACTGCTGGGATACTCCTGGTTCTTTTCTTGGCTCTCCTGTGGCTCCTCACGTGTTTCACTTTTCTGCTCAGGCTCGGGATCCAGGTCACCCAGTCCAGGTACCACTGGAGGAGGAGAATTTGCAGCTTCAGTGTCTGAATCAGAAAACAACTCTTTCAGGGTTTTCTTAGGCCACTGGGCCTGAATACTGGACCATACATCCTTATGGCCTTTGGTACGGCAGCCAGGTGTCCTGTCTTCCATTCCAGATGTCATTTTAGCTCGCTTGTCAGGGATTTCCCAGAATGCCGAAGACCGACCACCCTTGGCCTTTTCCTTCAGGCCGTTGTACTTCTTTGAAGGGGCACCCTTGGCTTTGTGGTGCATTAGAAGCTCTTCTTTGGCCTGGGATTCCATAAGAAGACCACCCTCATCCTCAGAACTGCTGCTGGACTGCATGCCTCCATCCAGAGTACCAATGTTTCTTTCTTCCAGCTTCTTAAGTGAACTCTCTGACAGCCAATCGCTCAACTTGCTACCCCTGGTTTTGCCTTTGCGTTGGGTTTTATGTGTACGCTCAGTAGTTCCATCAGCTTTTCTTCTCCTGGTGCTCAAGGCCTCCCCCTCTGTTACtaactgtttatttgtttctggACTGTACTGGCTGGATGATACCTCTGTGGTGCCCATACTCACTGAAGCTTTGTGTCCCTCACTGGATGGCTCACTTTCCCATTGTGGGGCTTTATAAAGGCTTTCTGGAGAAGCTCTTCTCTGAAGGCTTAGCTGGCCTGCTGGACAATCATTATTATGGTCACCTTGTTCATCCTGCTCATGTTTGCTGTGATCTATGGAGCTCTCAggtgctaacacacacacacacacacacacacacgcacgcacacaagcacacattcCTAGTTGTTCCTCACCCTAGAGCCAACGGGTTAGAAGGTGTTAGGCAGGACCCTGGTTTCAGAGCtttctaaatgaaataaaaagctgGTCGATTGGAAGATCTTCTTATGGTGCTTAAACTGGAATTTTCAATGTTTCCACATGCGCATGAAACCTGAGAGAGTTACACCAAAAAAGGGAACTAAAGGGGGACACAACTACACAAGCAGCTTCAAAACAAACATCATCAATTTCTTCACTTAAATATCAAGTGGTGCAATATCAGCACCAGTAAAATATAACAAAGAGCTAACATGCCCAATATAAATCCTCAATACATGCCTGTATACATGCCTAAGACAAATATGGACACTCAAGTCTGCTGCATTATATCagacttttcaaaacaaaaagaggTAAGTGTGTGAACACACTGGCTGAAGATAACAAACCAACATATGGAAGTTTATATATGTTAATGTAGTGAGGCAGTTGAGAGGAGAAATCACTGCAAAACAGAGAAAGGTAACATAACATCTGACAGAAGGTCCACTGCCTTTTGAAAAATAAGAGCAAGGCAAGAGACAAAGAAGTTTCAAAAGACATACTATATAAGCTGTTCAACCCAAGATGTTGTCAATTCCTTGTTTCTCTGAGAAAGTTCAGGGGATGGTGGATTGTTTTGTATTacaaagtctccatacatagggggaATTAACTGTTTTTAAGCGatatgtaactttatttacaaaaaatccTCTACATTTGTAATTGCCATTcctttgtaaacacacatggagtcatctctcccaactttggctcccagtttggcagaagtgttgtgtgtgatgtgcttgccatgtttcctgttaaagtccatcgcaaccttacatccagccatgagaatgatttcaatatttcaatgaTTTCTCTTTTATCAATGGCATTCTTAAAccctatctgaaaaaaaaaaatattatataaactaagtattttggaagacattttgctaaaaagtgttaatttcatttatgtgtggagacttttgggacaccctgtagtttggATTAGTTTTAACAGTCTTAAAGAGAAATATAGCTGCGAGAAGCAACTATCGGGGTTCAGGCGTTTT

Function

symbol description
arid4b Orthologous to human ARID4B (AT-rich interaction domain 4B).

NR:

description
PREDICTED: AT-rich interactive domain-containing protein 4B isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61422 True 2355 lncRNA 0.44 2 24197021 24210304

Neighbor

gene id symbol gene type direction distance location
LOC117596572 NA coding upstream 60174 24133623 ~ 24136847 (+)
lrrfip2 lrrfip2,LOC107679173 coding upstream 197621 23868151 ~ 23999400 (+)
si:dkey-78p8.1 NA coding upstream 746030 23428017 ~ 23450991 (+)
meis1b meis1,meis1b,LOC108423396,LOC107582672,LOC107660223,LOC108263472,LOC106613898,LOC101073206,LOC103387108,LOC107551348 coding upstream 920705 23220121 ~ 23276316 (+)
LOC113545030 NA coding upstream 1081982 23114185 ~ 23115039 (+)
ggps1 ggps1,LOC107728322 coding downstream 106399 24316703 ~ 24345368 (+)
cacul1 cacul1 coding downstream 206186 24416490 ~ 24440455 (+)
gpatch11 gpatch11 coding downstream 972849 25183153 ~ 25191848 (+)
tsnax tsnax,LOC107564242,LOC107557734,LOC107690806,LOC107730374 coding downstream 994835 25205139 ~ 25239169 (+)
LOC113541878 NA coding downstream 1147085 25357389 ~ 25364017 (+)
G51947 NA non-coding upstream 14241 24182581 ~ 24182780 (+)
G51945 NA non-coding upstream 29146 24160750 ~ 24167875 (+)
G51944 NA non-coding upstream 59649 24136911 ~ 24137372 (+)
G51840 NA non-coding upstream 183303 24013518 ~ 24013718 (+)
G51836 NA non-coding upstream 208407 23973567 ~ 23988614 (+)
G51957 NA non-coding downstream 4536 24214840 ~ 24215585 (+)
G51978 NA non-coding downstream 137256 24347560 ~ 24347812 (+)
G51977 NA non-coding downstream 148356 24358660 ~ 24362069 (+)
G51980 NA non-coding downstream 192404 24402708 ~ 24403344 (+)
LOC117596845 LOC107716903 non-coding downstream 444596 24654900 ~ 24659092 (+)
LOC113540163 NA other upstream 139123 24055154 ~ 24057898 (+)
slc29a3 slc29a3 other upstream 362170 23793680 ~ 23834851 (+)
G51749 NA other upstream 499727 23697032 ~ 23697294 (+)
G51562 NA other upstream 741472 23454428 ~ 23455549 (+)
LOC113540861 LOC108263311 other upstream 1283469 22911144 ~ 22913552 (+)
b3galnt2 b3galnt2 other downstream 139880 24350184 ~ 24402454 (+)
golga4 golga4 other downstream 1352098 25562402 ~ 25594936 (+)
acoxl acoxl other downstream 1591668 25801972 ~ 25846903 (+)
bcl2l11 bcl2l11 other downstream 1640296 25850600 ~ 25864346 (+)
G53328 NA other downstream 2775674 26985978 ~ 26992711 (+)

Expression


Co-expression Network