G52304


Basic Information

Item Value
gene id G52304
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 24920672 ~ 24923852 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU61812
ACAAAAATCCATAATGACAAATCAAACATATTTTTAGGCatgtttgcaaatttattaaaaatcagaacCTAAAATCTCTTATTAATATAACTATTCAGATCCTTGGCTAAGATACAACAGAttgagctcaggtgcatcctATTTGCTTTGATCGTCATGAGATGTGTCTAGAATTTGACTGGAGTctacctgtggcaaattcaattgactggacatgatttagaaaggcaCTTGTGCATGTAAGTTCCCACAAATCATAGTGCATGTGCATGCAGCATAAAATCCAAGAcatgaagtccaaggaactCTCTGTAAATCAAATAGTGTCAAGACATAGATCTGGGCAAGGGTATAAAACTCATTTCTAAAGCTTTTGATGTTCCCAGTATCACAGTGAGCTCCATCATTGTGAAATGAAAGAAGTTTGGAACTACCAGGACCCTTCTTGAGGTGGCCATCCAGCCAAACTCAtttttcacgaAACTTGAAACAGGAGTACTGGACGAGATTACAGGACAGGATTCTGAGGTCAAATAATTGTATCTCAGGAGCATGGCCACCATCAGCCTATCAGTTTTTGAAAGGAATAACAGTGAGCTATTGTCACAAAACTTGAATGGTAGGTTCCATTCAAGGAACCCATTATTCATGTTTGTGCAGCCAAAAACAAGCATATTCCTTTGAAAATAAGGTGAACAGTGAAATATtattctccctaatttagtcatggccaattcccacaCATCaggcagctctcccctatcacatgacagctatcAACCGAAGGCCATCACGTGCTCCATGAAGACACGTGCACATAAAGCCACTCGACCACACCTTTTGGAAATGTTGCTAATGCAGCGTCAGGGGCGGCCATAACAcaagaggaaagcactatctgcccacttctgcatgcatgagctcacagaagcccatgattggctagtgttgctttGCTTGATAGAGGAGAtggagagtatgccacccctacCTCCCTGAGAACATGGTGAACTATGttgttttttatctttattcttTTCCAATACAAAACTGCTTTTTAGACCATTTAGCCCACTTGTgatagtcctaggatttttggccacTCTTCACAGTATTGATGTTAAACTACTCAGGAGAGTGTgaaactcaataattatcaaaaacacattGTGCTTTGTTAACAACACACATCAGTCAATTCTAAGACGGCAAAACAAATTTGAAAGCCATGTTCAGGTTCTGTGAAAGTCTTCAAAGGTTGGGGTGTGGTCATTGATAAAGGGTGGAGTTTAGTCCAAATAGCTGTTTCAcaggaaccaaaagtccaaCTGAGCTGCATTGAtctgctaatctgtaactggTTTTTAATAGTCACTgaattacttcaaaaacatggctgctttcagccaatcagatttcagcaggcattttaCACAACTAGCATTGAGTTATCAacacaaaacttgataagtcatctatggtctctttattgttctatgtatctttgcaagaactggccactgggggcaCGGTTTGTgaggagtgcttggaccccgccgATCACCGCTTGTGGCTAGATTTAGGGGTCCGAAGGTGctggaaccctattgttttattttttgggatgtttaaaatgtttttttattgattaacaTAAAGCAAAAGACAAATGTTACAGTCCAAAAGCAAATGTACATATTGCTCAccactttcttgttttttcagCATGCCCCCACCCTCCACCCCAACATATAACAAAGTGCATCTTGTACATCATGTCATATTCTATGAgtgtaaaaaataacaaatgaaagatacgaataacatgtaaatcaattcaacaaataagaaaatacataaaattactttaatattcataatggcagaaagaatgaaaataagaataaaaaatgagGCTATTGGCAATTATATAGATTTGTGTATACACTGATGTTCTCgatgttgatgtgttggaagcaggaaaaatgggcaagtgtaaggctctgagcaactttgacaagggccaaattgtgatggctagacaactgggtcagatcatctccaaaatggcaggtctcgTGGGGTAAAAAAggtaatgctggctatgatagaaaggtgtcagaacacacaatgcatcgcagcttgctgcatagccgcagaccggtcggcttgcccatgctgacccctgtccactgccaaaagcgccTACAGTGGgaacatgagcatcagaactggaccatggagcaatggaagaaggtggtctgatgaatcacattttcttttacatcatgtaaatggccgggtgcatgtgcatggtttgaggaacatgaaaaagagttcgagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61812 True 2344 lncRNA 0.40 2 24920672 24923852

Neighbor

gene id symbol gene type direction distance location
arid4b arid4b,LOC107690809,LOC102789854 coding downstream 604244 24190418 ~ 24316428 (-)
mrpl14 mrpl14,LOC102799944 coding downstream 1053142 23862719 ~ 23867530 (-)
mgme1 mgme1 coding downstream 1079812 23837939 ~ 23840860 (-)
kifc1 kifc1,LOC108261151,LOC108261048,LOC108261613 coding downstream 1169911 23727152 ~ 23750761 (-)
c1d c1d coding downstream 1240691 23672419 ~ 23679981 (-)
dnajc12 dnajc12 coding upstream 384454 25308306 ~ 25330202 (-)
msh6 msh6 coding upstream 570824 25494676 ~ 25504756 (-)
LOC113541965 zc3h6,LOC102799538,LOC100704674 coding upstream 761832 25685684 ~ 25697851 (-)
mertka mertk coding upstream 826201 25750053 ~ 25770046 (-)
lhcgr LOC108262811,LOC108430256 coding upstream 849035 25772887 ~ 25791400 (-)
G52300 NA non-coding downstream 38716 24879497 ~ 24881956 (-)
G52283 NA non-coding downstream 131577 24788891 ~ 24789095 (-)
G52282 NA non-coding downstream 132813 24787513 ~ 24787859 (-)
G52259 NA non-coding downstream 178004 24738828 ~ 24742668 (-)
G52157 NA non-coding downstream 277756 24642096 ~ 24642916 (-)
G52310 NA non-coding upstream 78268 25002120 ~ 25010303 (-)
G52373 gpatch11 non-coding upstream 261983 25185835 ~ 25189496 (-)
G52438 NA non-coding upstream 411030 25334882 ~ 25335127 (-)
G52451 NA non-coding upstream 434769 25358621 ~ 25360911 (-)
G52452 NA non-coding upstream 437669 25361521 ~ 25362463 (-)
herc4 herc4,LOC107689351 other downstream 184784 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 268825 24451986 ~ 24651847 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other downstream 788189 24108351 ~ 24132483 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other downstream 880572 24016896 ~ 24040100 (-)
G51576 NA other downstream 1466455 23447908 ~ 23454217 (-)
LOC113542183 NA other upstream 986166 25910018 ~ 25910119 (-)
dst dst other upstream 2134045 27057897 ~ 27195955 (-)
zgc:163080 tmem14a other upstream 2613917 27537769 ~ 27541331 (-)
G54269 NA other upstream 3509368 28433220 ~ 28435411 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 4955443 29879295 ~ 30111161 (-)

Expression


Co-expression Network