G52348


Basic Information

Item Value
gene id G52348
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25225687 ~ 25231677 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU61861
ATAATTCTTCATTAAGTTGTCAAAACTCTCATTTATTCTTTGATTTTCTAAGATTCTGGAGCCATTCCTGTCCTTAATTGCAGGAATATGACCCTTTGCAAGCGCATTTTTAACTAATCTTGCGAGAAGTTGGTTAGGTATATTACCCATCTTGAAAAATCTTTGTCTTGCAAATAGTATATCCTTACCTGCTTTTCTggttaataatttgtttaactGCACCCTTAGAGATTTAATTTCAACAAGAAGCTGGTCTgattttaaggaataaaatcattattctAGCTGTGAAATCTTCTTTTCTAGTTTCATTTGttaagttttaattattttaaaatatatggcGAGGAGCAATATTTACATACGATATtattaacatacagtatttctttaGTACCACAGTTGCAAAATCATGGTCAACATAAAGGCAAGCACTGTTTAAATAAACTACATTTTCTGCCATGCTATACATTGCATCCCTTCTTTTATTTTGTAGCTCAAAACAAATTTGACTCTGATGACTGGTGTCTTTGCCAGGAGACCAGTTGTAACGAggagtcaacagaatggggatccattagcagcgttttaataaaaggcagacacagtcgtacaggcgtggtcgagcaacagcgaaacagggtaatcagaggctaaacaaaggcagagtgatcaaacaggcagatggtcagggcaggcagcaaagaatccagaaacgagaagaaacagtccaaggtcaaacactgtaatccaacaaagaagatataaacgctcagaaatgtcagccggggcaaaacaagacttcgcaatgagtgagcgagaggcggaggcttaagtagtcccggtaataggctgcaggtgagctcgtaatcagtgctgggtgcggggtgatgggaaatgtagtttcgaggggaaagtcaatacttgggtgatggtgacctctggtgacgatcagggggaaccacagaggccggattcgttacaCCAGTAGGCTGTGTGTTGCCCTTTCTCAGTTTTCAGTGCACAATGTGAAAAGCCAAGCACATCTATTAATGAAATTTCCATAAAGCTACCCTGCAAAAATGGCCTTCTTGGTAGCATAGCACCCATGTCTGTCAGTGGTATAAAAGCCACGCTGCTTGAATCACAGTTCCTGCTTCATCAATTTGTACTACCGCTTCTTCGAACATGTTATTAATTCTTCTCAGTTAATATAAGTAGATGGTTGTTTATCTTGTGTAAAGTCCCTGACTTCATACATTTTGCTTTGCAGGCTAACATCATGCTGCTCTTCTCAGTAAAAGGAAAGAATTAAGCAGCAGGTCCAGCAGCAGtctctgggattttttttttcatatac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61861 True 1360 lncRNA 0.40 2 25225687 25231677

Neighbor

gene id symbol gene type direction distance location
gpatch11 gpatch11 coding upstream 33839 25183153 ~ 25191848 (+)
cacul1 cacul1 coding upstream 785232 24416490 ~ 24440455 (+)
ggps1 ggps1,LOC107728322 coding upstream 880319 24316703 ~ 24345368 (+)
LOC117596572 NA coding upstream 1088840 24133623 ~ 24136847 (+)
lrrfip2 lrrfip2,LOC107679173 coding upstream 1226287 23868151 ~ 23999400 (+)
LOC113541878 NA coding downstream 125712 25357389 ~ 25364017 (+)
sirt1 sirt1 coding downstream 133438 25365115 ~ 25386138 (+)
LOC113542106 NA coding downstream 218861 25450538 ~ 25459746 (+)
fbxo11a fbxo11a,LOC108263457,LOC108413220,LOC106590975,LOC107725019,LOC107679165 coding downstream 239798 25471475 ~ 25494533 (+)
kcnk12 LOC108430255,LOC107679129,LOC107688640,LOC107585442 coding downstream 283540 25515217 ~ 25538325 (+)
G52236 LOC106909512 non-coding upstream 241945 24974316 ~ 24983742 (+)
G52233 sipa1l2 non-coding upstream 265698 24953789 ~ 24959989 (+)
G52241 NA non-coding upstream 343076 24881690 ~ 24882611 (+)
G52219 NA non-coding upstream 392285 24830539 ~ 24833402 (+)
G52204 NA non-coding upstream 424398 24800517 ~ 24801289 (+)
G52351 NA non-coding downstream 10635 25242312 ~ 25242563 (+)
G52359 NA non-coding downstream 18372 25250049 ~ 25250506 (+)
G52360 NA non-coding downstream 19298 25250975 ~ 25251262 (+)
G52363 NA non-coding downstream 23835 25255512 ~ 25256032 (+)
LOC113542024 NA non-coding downstream 33954 25265631 ~ 25288587 (+)
b3galnt2 b3galnt2 other upstream 823233 24350184 ~ 24402454 (+)
LOC113540163 NA other upstream 1167789 24055154 ~ 24057898 (+)
slc29a3 slc29a3 other upstream 1390836 23793680 ~ 23834851 (+)
G51749 NA other upstream 1528393 23697032 ~ 23697294 (+)
G51562 NA other upstream 1770138 23454428 ~ 23455549 (+)
golga4 golga4 other downstream 330725 25562402 ~ 25594936 (+)
acoxl acoxl other downstream 570295 25801972 ~ 25846903 (+)
bcl2l11 bcl2l11 other downstream 618923 25850600 ~ 25864346 (+)
G53328 NA other downstream 1754301 26985978 ~ 26992711 (+)
znf451 znf451 other downstream 1966232 27197909 ~ 27207245 (+)

Expression


Co-expression Network