Gene
RNA
| Item | Value |
|---|---|
| gene id | G52360 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 25250975 ~ 25251262 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU61873 | True | 288 | lncRNA | 0.27 | 1 | 25250975 | 25251262 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| tsnax | tsnax,LOC107564242,LOC107557734,LOC107690806,LOC107730374 | coding | upstream | 11806 | 25205139 ~ 25239169 (+) |
| gpatch11 | gpatch11 | coding | upstream | 59127 | 25183153 ~ 25191848 (+) |
| cacul1 | cacul1 | coding | upstream | 810520 | 24416490 ~ 24440455 (+) |
| ggps1 | ggps1,LOC107728322 | coding | upstream | 905607 | 24316703 ~ 24345368 (+) |
| LOC117596572 | NA | coding | upstream | 1114128 | 24133623 ~ 24136847 (+) |
| LOC113541878 | NA | coding | downstream | 106127 | 25357389 ~ 25364017 (+) |
| sirt1 | sirt1 | coding | downstream | 113853 | 25365115 ~ 25386138 (+) |
| LOC113542106 | NA | coding | downstream | 199276 | 25450538 ~ 25459746 (+) |
| fbxo11a | fbxo11a,LOC108263457,LOC108413220,LOC106590975,LOC107725019,LOC107679165 | coding | downstream | 220213 | 25471475 ~ 25494533 (+) |
| kcnk12 | LOC108430255,LOC107679129,LOC107688640,LOC107585442 | coding | downstream | 263955 | 25515217 ~ 25538325 (+) |
| G52359 | NA | non-coding | upstream | 469 | 25250049 ~ 25250506 (+) |
| G52351 | NA | non-coding | upstream | 8412 | 25242312 ~ 25242563 (+) |
| G52348 | NA | non-coding | upstream | 19298 | 25225687 ~ 25231677 (+) |
| G52236 | LOC106909512 | non-coding | upstream | 267233 | 24974316 ~ 24983742 (+) |
| G52233 | sipa1l2 | non-coding | upstream | 290986 | 24953789 ~ 24959989 (+) |
| G52363 | NA | non-coding | downstream | 4250 | 25255512 ~ 25256032 (+) |
| LOC113542024 | NA | non-coding | downstream | 14369 | 25265631 ~ 25288587 (+) |
| G52406 | NA | non-coding | downstream | 41771 | 25293033 ~ 25293271 (+) |
| G52456 | NA | non-coding | downstream | 127091 | 25378353 ~ 25380775 (+) |
| G52483 | NA | non-coding | downstream | 232541 | 25483803 ~ 25484191 (+) |
| b3galnt2 | b3galnt2 | other | upstream | 848521 | 24350184 ~ 24402454 (+) |
| LOC113540163 | NA | other | upstream | 1193077 | 24055154 ~ 24057898 (+) |
| slc29a3 | slc29a3 | other | upstream | 1416124 | 23793680 ~ 23834851 (+) |
| G51749 | NA | other | upstream | 1553681 | 23697032 ~ 23697294 (+) |
| G51562 | NA | other | upstream | 1795426 | 23454428 ~ 23455549 (+) |
| golga4 | golga4 | other | downstream | 311140 | 25562402 ~ 25594936 (+) |
| acoxl | acoxl | other | downstream | 550710 | 25801972 ~ 25846903 (+) |
| bcl2l11 | bcl2l11 | other | downstream | 599338 | 25850600 ~ 25864346 (+) |
| G53328 | NA | other | downstream | 1734716 | 26985978 ~ 26992711 (+) |
| znf451 | znf451 | other | downstream | 1946647 | 27197909 ~ 27207245 (+) |
