LOC113542024


Basic Information

Item Value
gene id LOC113542024
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25265631 ~ 25288587 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU61883
AGCAGGAACTGCAGAATTCCCATTGCAACTCACTGAAGTAAAGGGACCAGCATCGGCCTGATGGTGGCACTACAGTGCAAGCATTCACTTTTTTTCCTATATCTTGAGAACTTGAGCGGAGGCCATCCACGCCAGATCCACGCCATCtcaaataatatcaacaaatctttgaCTAAGtCAAAAGGAATCCACAGTCCAGATCCAGAGATACTTCATTCAACACCCTCCAATGATGATGTCAGCCATACTTGTGAAACCACAAGCGACATGAATATGAAGTTGACTGTGTAGTTTATTCCTCTAACACAGTTCCTGACCATTTGTTTAATGATGAGTCAGATTCCTGTGTCGCTGTTGTCATTCAAGCATCCCTGGAAAATACTGGAGTGCAGTTGGACCTGTTTCTGGTGATAGTGCTGCTGATGGAATCCACAGTCACTTGCCAGATATCTCTCTGTGGCAAAACACTGTACTGAAATTGACAACCAAATACAGCTAAATGGAACTTTATCAGGCAACTAACAAGAAAGTAACACTGATGATAAAACCATCAAAAGAATGCTTAAACTAACAGGAGCAACAGACCTGAAAAAAAttgatctgaaaaaaaaatggtaaactTTTTATGCTTCTGCATAGGGTTGACTGTGATTTACCAAAACAAAATTGAAGTTACCTTTAATAGTTTGTGTGGTTTTAAACCCTAGACCTGTGGCACACACAAATGGAGCCATGCTGTTCTTCTTGGAAAGAACAGCAGGTCTGTTATTACTGCTCTGTCACCGTGCCTTTTAAAGTCTGTTCTGAGTGTCTCAGGGTAATCTCTGAGCAgcttttttcagtattttttcctCCCTACTTCACTGGTCATGTCCCCTGGGTAGTGGATCACCAGTCACCATCTAGACtcaatttgttgttgttttgggtCCATTTTTCAAATTGAGAAAATTGCTGTGTTCTCCACTTTCTTTATATACAGAGCTAAGCTGTTTAgctatgttttcttttacatggaTGCACTAGAAGTCCagttattctttaaataaaaatgttcacacC
>XR_004577846.1
aagtcTACAggtgttcataataaagtggatggtgagtgagTGGCTGCGTCGGAATATCCCCACTACCCTACTATTACAGTAGGTGAAAAGCAATACACCAAAGGAGGTGTATGTCCGAATTCTCAGTACTCATAAAACAGTAGGGGAGAAATTTCCGGATGACCTACTGCTTCCAAAGAGAATTTCATAATCAACAGGACTGGTGAGGAAGAGctgtcagaatcaaaaatggCAAAAGGCAGTGTGTCAGTGTAAGTGCTACAGGTATTAAACGTTGTTCCTTGTGCCTTGTGGTATTGTattcatactacacacacatactgatcaGTACATACTGTATCAACTGCCAagcagtaggtactgaatcgaaTGCAGTATGTACTGTCACAGTACATGATTTCAGATGCAGTCTATATCTCCTCAACCATTTGACATACATTTCTGGTGTACTTCaccagaaaaacagagagatggGAGTCTACGGACATGCTTGTTCTTAGCAGGACAGAATTTGAGTTTAACAACCCTGGTTTATATGGATCGTAATCTAGACATTCTGTctaaaaatctgtgttttttgtatgtatatCCAAAATTATGTGCATGTGTAGATTGAGGTTTAAGGACATTTTTACTTGAATAGATTAACACCAATAACCCACCCTAAAAGACAAATAGGAAGattcttgggaaaaaaaagggcaaataGTGCCTATTCTATATTAATCCGGTGAGTGCGTTCAGCTTTTGAACTATACCAGTGTTTGAACGAGATTCAAAATAATTACCCATCTCATGAAACGTTATCCTGCAGACAGGCACATAAAACTGTGTCAAATTCTTGTCACAATCCCAGTCAGCATGTGTGTCATGTGCATGTATATTTGAGTCATGATGCACTTGTACAATATAGTAGCTGTATAAGAAAACACAGTTCATCTTACAGATTTTAATAGGGATTGGGTTCAAATACTTGTTTCTCAGGCTGTAAATCTACTCAAGTTAAATCTGTTATATTGCATACTTGTGCTAATCTGTGAAAGAATTTTTAATGTTGATTAGGTTACTTTAAAAGCATAGcagcaatcagccaatcacattgcaGCACACACGTCACAGTTTTACCTTTATGTTACCATCACGATAGTATGTTTATCCGTGGTTCATTTAGTGTACTATACAAGTTATTGAGAACTATCTAGTTGTGGTGCAGTTGGCACACATTTGCTTGGCCCCCGCAGATCGCTTCTTGTGactttatttcttattactaTGGCGTCCAAGCAGGAACTGCAGAATTCCCATTGCAACTCACTGAAGTAAAGGGACCAGCATCGGCCTGATGGTGGCACTACAGTGCAAGCATTCACTTTTTTTCCTATATCTTGAGAACTTGAGCGGAGGCCATCCACGCCAGATCCACGCCATCtcaaataatatcaacaaatctttgaCTAAGACCAGGAAAATGCAGAGGAGATGTTTAAGAAAGAATAGGAAGAGATGCCATCAAGTGGGCCCTGCAGATTCTGATTCAACACCTGATGAATTGACAGAGTAAATACAGGAAATAtCAAAAGGAATCCACAGTCCAGATCCAGAGATACTTCATTCAACACCCTCCAATGATGATGTCAGCCATACTTGTGAAACCACAAGCGACATGAATATGAAGTTGACTGTGTAGTTTATTCCTCTAACACAGTTCCTGACCATTTGTTTAATGATGAGTCAGATTCCTGTGTCGCTGTTGTCATTCAAGCATCCCTGGAAAATACTGGAGTGCAGTTGGACCTGTTTCTGGTGATAGTGCTGCTGATGGAATCCACAGTCACTTGCCAGATATCTCTCTG
>XR_004577847.1
aagtcTACAggtgttcataataaagtggatggtgagtgagTGGCTGCGTCGGAATATCCCCACTACCCTACTATTACAGTAGGTGAAAAGCAATACACCAAAGGAGGTGTATGTCCGAATTCTCAGTACTCATAAAACAGTAGGGGAGAAATTTCCGGATGACCTACTGCTTCCAAAGAGAATTTCATAATCAACAGGACTGGTGAGGAAGAGctgtcagaatcaaaaatggCAAAAGGCAGTGTGTCAGTGTAAGTGCTACAGGTATTAAACGTTGTTCCTTGTGCCTTGTGGTATTGTattcatactacacacacatactgatcaGTACATACTGTATCAACTGCCAagcagtaggtactgaatcgaaTGCAGTATGTACTGTCACAGTACATGATTTCAGATGCAGTCTATATCTCCTCAACCATTTGACATACATTTCTGGTGTACTTCaccagaaaaacagagagatggGAGTCTACGGACATGCTTGTTCTTAGCAGGACAGAATTTGAGTTTAACAACCCTGGTTTATATGGATCGTAATCTAGACATTCTGTctaaaaatctgtgttttttgtatgtatatCCAAAATTATGTGCATGTGTAGATTGAGGTTTAAGGACATTTTTACTTGAATAGATTAACACCAATAACCCACCCTAAAAGACAAATAGGAAGattcttgggaaaaaaaagggcaaataGTGCCTATTCTATATTAATCCGGTGAGTGCGTTCAGCTTTTGAACTATACCAGTGTTTGAACGAGATTCAAAATAATTACCCATCTCATGAAACGTTATCCTGCAGACAGGCACATAAAACTGTGTCAAATTCTTGTCACAATCCCAGTCAGCATGTGTGTCATGTGCATGTATATTTGAGTCATGATGCACTTGTACAATATAGTAGCTGTATAAGAAAACACAGTTCATCTTACAGATTTTAATAGGGATTGGGTTCAAATACTTGTTTCTCAGGCTGTAAATCTACTCAAGTTAAATCTGTTATATTGCATACTTGTGCTAATCTGTGAAAGAATTTTTAATGTTGATTAGGTTACTTTAAAAGCATAGcagcaatcagccaatcacattgcaGCACACACGTCACAGTTTTACCTTTATGTTACCATCACGATAGTATGTTTATCCGTGGTTCATTTAGTGTACTATACAAGTTATTGAGAACTATCTAGTTGTGGTGCAGTTGGCACACATTTGCTTGGCCCCCGCAGATCGCTTCTTGTGactttatttcttattactaTGGCGTCCAAGCAGGAACTGCAGAATTCCCATTGCAACTCACTGAAGTAAAGGGACCAGCATCGGCCTGATGGTGGCACTACAGTGCAAGCATTCACTTTTTTTCCTATATCTTGAGAACTTGAGCGGAGGCCATCCACGCCAGATCCACGCCATCtcaaataatatcaacaaatctttgaCTAAGaaGTGCGGGTCAATGGTGAAGGGAATGGGGAGTGAAGGAAGGTAGCGTGCTGATGGCAGTGAGGGGTTGTCCCGGAGTGGAGTGCGGCGAGCAAGCAGCGAGCAAGCGGCAGCAGCGGGATGtacaattatacagtataaagcacATTAAGACCTGTCTTCTCATTATAGACAAAGGTTCTCTAGTCCATAACCTTCTAAATGTCACTAATTTCATCACAGACCAGGAAAATGCAGAGGAGATGTTTAAGAAAGAATAGGAAGAGATGCCATCAAGTGGGCCCTGCAGATTCTGATTCAACACCTGATGAATTGACAGAGTAAATACAGGAAATAtCAAAAGGAATCCACAGTCCAGATCCAGAGATACTTCATTCAACACCCTCCAATGATGATGTCAGCCATACTTGTGAAACCACAAGCGACATGAATATGAAGTTGACTGTGTAGTTTATTCCTCTAACACAGTTCCTGACCATTTGTTTAATGATGAGTCAGATTCCTGTGTCGCTGTTGTCATTCAAGCATCCCTGGAAAATACTGGAGTGCAGTTGGACCTGTTTCTGGTGATAGTGCTGCTGATGGAATCCACAGTCACTTGCCAGATATCTCTCTG
>XR_004577848.1
aagtcTACAggtgttcataataaagtggatggtgagtgagTGGCTGCGTCGGAATATCCCCACTACCCTACTATTACAGTAGGTGAAAAGCAATACACCAAAGGAGGTGTATGTCCGAATTCTCAGTACTCATAAAACAGTAGGGGAGAAATTTCCGGATGACCTACTGCTTCCAAAGAGAATTTCATAATCAACAGGACTGGTGAGGAAGAGctgtcagaatcaaaaatggCAAAAGGCAGTGTGTCAGTGTAAGTGCTACAGGTATTAAACGTTGTTCCTTGTGCCTTGTGGTATTGTattcatactacacacacatactgatcaGTACATACTGTATCAACTGCCAagcagtaggtactgaatcgaaTGCAGTATGTACTGTCACAGTACATGATTTCAGATGCAGTCTATATCTCCTCAACCATTTGACATACATTTCTGGTGTACTTCaccagaaaaacagagagatggGAGTCTACGGACATGCTTGTTCTTAGCAGGACAGAATTTGAGTTTAACAACCCTGGTTTATATGGATCGTAATCTAGACATTCTGTctaaaaatctgtgttttttgtatgtatatCCAAAATTATGTGCATGTGTAGATTGAGGTTTAAGGACATTTTTACTTGAATAGATTAACACCAATAACCCACCCTAAAAGACAAATAGGAAGattcttgggaaaaaaaagggcaaataGTGCCTATTCTATATTAATCCGGTGAGTGCGTTCAGCTTTTGAACTATACCAGTGTTTGAACGAGATTCAAAATAATTACCCATCTCATGAAACGTTATCCTGCAGACAGGCACATAAAACTGTGTCAAATTCTTGTCACAATCCCAGTCAGCATGTGTGTCATGTGCATGTATATTTGAGTCATGATGCACTTGTACAATATAGTAGCTGTATAAGAAAACACAGTTCATCTTACAGATTTTAATAGGGATTGGGTTCAAATACTTGTTTCTCAGGCTGTAAATCTACTCAAGTTAAATCTGTTATATTGCATACTTGTGCTAATCTGTGAAAGAATTTTTAATGTTGATTAGGTTACTTTAAAAGCATAGcagcaatcagccaatcacattgcaGCACACACGTCACAGTTTTACCTTTATGTTACCATCACGATAGTATGTTTATCCGTGGTTCATTTAGTGTACTATACAAGTTATTGAGAACTATCTAGTTGTGGTGCAGTTGGCACACATTTGCTTGGCCCCCGCAGATCGCTTCTTGTGactttatttcttattactaTGGCGTCCAAGCAGGAACTGCAGAATTCCCATTGCAACTCACTGAAGTAAAGGGACCAGCATCGGCCTGATGGTGGCACTACAGTGCAAGCATTCACTTTTTTTCCTATATCTTGAGAACTACAGTGAGCGGAGGCCATCCACGCCAGATCCACGCCATCtcaaataatatcaacaaatctttgaCTAAGaaGTGCGGGTCAATGGTGAAGGGAATGGGGAGTGAAGGAAGGTAGCGTGCTGATGGCAGTGAGGGGTTGTCCCGGAGTGGAGTGCGGCGAGCAAGCAGCGAGCAAGCGGCAGCAGCGGGATGtacaattatacagtataaagcacATTAAGACCTGTCTTCTCATTATAGACAAAGGTTCTCTAGTCCATAACCTTCTAAATGTCACTAATTTCATCACAGACCAGGAAAATGCAGAGGAGATGTTTAAGAAAGAATAGGAAGAGATGCCATCAAGTGGGCCCTGCAGATTCTGATTCAACACCTGATGAATTGACAGAGTAAATACAGGAAATAtCAAAAGGAATCCACAGTCCAGATCCAGAGATACTTCATTCAACACCCTCCAATGATGATGTCAGCCATACTTGTGAAACCACAAGCGACATGAATATGAAGTTGACTGTGTAGTTTATTCCTCTAACACAGTTCCTGACCATTTGTTTAATGATGAGTCAGATTCCTGTGTCGCTGTTGTCATTCAAGCATCCCTGGAAAATACTGGAGTGCAGTTGGACCTGTTTCTGGTGATAGTGCTGCTGATGGAATCCACAGTCACTTGCCAGATATCTCTCTG
>XR_004577849.1
aagtcTACAggtgttcataataaagtggatggtgagtgagTGGCTGCGTCGGAATATCCCCACTACCCTACTATTACAGTAGGTGAAAAGCAATACACCAAAGGAGGTGTATGTCCGAATTCTCAGTACTCATAAAACAGTAGGGGAGAAATTTCCGGATGACCTACTGCTTCCAAAGAGAATTTCATAATCAACAGGACTGGTGAGGAAGAGctgtcagaatcaaaaatggCAAAAGGCAGTGTGTCAGTGTAAGTGCTACAGGTATTAAACGTTGTTCCTTGTGCCTTGTGGTATTGTattcatactacacacacatactgatcaGTACATACTGTATCAACTGCCAagcagtaggtactgaatcgaaTGCAGTATGTACTGTCACAGTACATGATTTCAGATGCAGTCTATATCTCCTCAACCATTTGACATACATTTCTGGTGTACTTCaccagaaaaacagagagatggGAGTCTACGGACATGCTTGTTCTTAGCAGGACAGAATTTGAGTTTAACAACCCTGGTTTATATGGATCGTAATCTAGACATTCTGTctaaaaatctgtgttttttgtatgtatatCCAAAATTATGTGCATGTGTAGATTGAGGTTTAAGGACATTTTTACTTGAATAGATTAACACCAATAACCCACCCTAAAAGACAAATAGGAAGattcttgggaaaaaaaagggcaaataGTGCCTATTCTATATTAATCCGGTGAGTGCGTTCAGCTTTTGAACTATACCAGTGTTTGAACGAGATTCAAAATAATTACCCATCTCATGAAACGTTATCCTGCAGACAGGCACATAAAACTGTGTCAAATTCTTGTCACAATCCCAGTCAGCATGTGTGTCATGTGCATGTATATTTGAGTCATGATGCACTTGTACAATATAGTAGCTGTATAAGAAAACACAGTTCATCTTACAGATTTTAATAGGGATTGGGTTCAAATACTTGTTTCTCAGGCTGTAAATCTACTCAAGTTAAATCTGTTATATTGCATACTTGTGCTAATCTGTGAAAGAATTTTTAATGTTGATTAGGTTACTTTAAAAGCATAGcagcaatcagccaatcacattgcaGCACACACGTCACAGTTTTACCTTTATGTTACCATCACGATAGTATGTTTATCCGTGGTTCATTTAGTGTACTATACAAGTTATTGAGAACTATCTAGTTGTGGTGCAGTTGGCACACATTTGCTTGGCCCCCGCAGATCGCTTCTTGTGactttatttcttattactaTGGCGTCCAAGCAGGAACTGCAGAATTCCCATTGCAACTCACTGAAGTAAAGGGACCAGCATCGGCCTGATGGTGGCACTACAGTGCAAGCATTCACTTTTTTTCCTATATCTTGAGAACTACAGTGAGCGGAGGCCATCCACGCCAGATCCACGCCATCtcaaataatatcaacaaatctttgaCTAAGACCAGGAAAATGCAGAGGAGATGTTTAAGAAAGAATAGGAAGAGATGCCATCAAGTGGGCCCTGCAGATTCTGATTCAACACCTGATGAATTGACAGAGTAAATACAGGAAATAtCAAAAGGAATCCACAGTCCAGATCCAGAGATACTTCATTCAACACCCTCCAATGATGATGTCAGCCATACTTGTGAAACCACAAGCGACATGAATATGAAGTTGACTGTGTAGTTTATTCCTCTAACACAGTTCCTGACCATTTGTTTAATGATGAGTCAGATTCCTGTGTCGCTGTTGTCATTCAAGCATCCCTGGAAAATACTGGAGTGCAGTTGGACCTGTTTCTGGTGATAGTGCTGCTGATGGAATCCACAGTCACTTGCCAGATATCTCTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61883 False 1062 lncRNA 0.40 3 25266913 25288587
XR_004577846.1 False 1853 lncRNA 0.40 4 25265631 25287982
XR_004577847.1 False 2074 lncRNA 0.41 4 25265631 25287982
XR_004577848.1 True 2078 lncRNA 0.41 4 25265631 25287982
XR_004577849.1 False 1857 lncRNA 0.40 4 25265631 25287982

Neighbor

gene id symbol gene type direction distance location
tsnax tsnax,LOC107564242,LOC107557734,LOC107690806,LOC107730374 coding upstream 26462 25205139 ~ 25239169 (+)
gpatch11 gpatch11 coding upstream 73783 25183153 ~ 25191848 (+)
cacul1 cacul1 coding upstream 825176 24416490 ~ 24440455 (+)
ggps1 ggps1,LOC107728322 coding upstream 920263 24316703 ~ 24345368 (+)
LOC117596572 NA coding upstream 1128784 24133623 ~ 24136847 (+)
LOC113541878 NA coding downstream 68802 25357389 ~ 25364017 (+)
sirt1 sirt1 coding downstream 76528 25365115 ~ 25386138 (+)
LOC113542106 NA coding downstream 161951 25450538 ~ 25459746 (+)
fbxo11a fbxo11a,LOC108263457,LOC108413220,LOC106590975,LOC107725019,LOC107679165 coding downstream 182888 25471475 ~ 25494533 (+)
kcnk12 LOC108430255,LOC107679129,LOC107688640,LOC107585442 coding downstream 226630 25515217 ~ 25538325 (+)
G52363 NA non-coding upstream 9599 25255512 ~ 25256032 (+)
G52360 NA non-coding upstream 14369 25250975 ~ 25251262 (+)
G52359 NA non-coding upstream 15125 25250049 ~ 25250506 (+)
G52351 NA non-coding upstream 23068 25242312 ~ 25242563 (+)
G52348 NA non-coding upstream 33954 25225687 ~ 25231677 (+)
G52406 NA non-coding downstream 4446 25293033 ~ 25293271 (+)
G52456 NA non-coding downstream 89766 25378353 ~ 25380775 (+)
G52483 NA non-coding downstream 195216 25483803 ~ 25484191 (+)
G52683 NA non-coding downstream 599964 25888551 ~ 25888782 (+)
G52873 NA non-coding downstream 932726 26221313 ~ 26221544 (+)
b3galnt2 b3galnt2 other upstream 863177 24350184 ~ 24402454 (+)
LOC113540163 NA other upstream 1207733 24055154 ~ 24057898 (+)
slc29a3 slc29a3 other upstream 1430780 23793680 ~ 23834851 (+)
G51749 NA other upstream 1568337 23697032 ~ 23697294 (+)
G51562 NA other upstream 1810082 23454428 ~ 23455549 (+)
golga4 golga4 other downstream 273815 25562402 ~ 25594936 (+)
acoxl acoxl other downstream 513385 25801972 ~ 25846903 (+)
bcl2l11 bcl2l11 other downstream 562013 25850600 ~ 25864346 (+)
G53328 NA other downstream 1697391 26985978 ~ 26992711 (+)
znf451 znf451 other downstream 1909322 27197909 ~ 27207245 (+)

Expression


Co-expression Network