G52373 (gpatch11)


Basic Information

Item Value
gene id G52373
gene name gpatch11
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25185835 ~ 25189496 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU61895
ccctttttaaattaaaaattttaattagaaattaaaattagcAACCTTTAAAATaagtcaaaattattaaaacctcAATTTTAGTTGAGAACTGTAATAATCAactataatttacattttctgaagcAAATGTGAGTGGTGCTTGCCCATGCAAATTCGACACTGACATGCAGCTGCACATGCTGGTTAGTAGGAGGAGCTACATGTGTGTAGAATGTAATTCTCCTCAGTCTGCCAAGCGTTTTGATATGTCACATGTGTATGCTGTAGTAGAtttgtgattccacttattttggggGTTAACGTGCACAGAACTTGCATGTTATGTCATTAAAATACCTATAATGCAATTTTCCTTAAAAATGAAGTGTAAATTTATCACAAACTTTTCcacagatataaagaaaaaaataaaatttgttgaAGGTGGTGCAGTCACAAATCCTCTTGagtacattcagggcatggtcatgaagatacttatcaagttttgtgatgatacttggatgcattgctgagatacaccctcagATCCTGTTTTTTGCTAGCACATTCCCGGAGAACgggtttgaatatcaaaattccttttgtaacttttgttcagacaggtctcaagatgatatGAGCCAAAcatggtgaagattggacaaaatttggaggaggggtagcaaaaatggcagtaagatgtaagcatttttggcatgttattgtaacttttgacaaGTAGATGGGAAGCTTACTCGTGAAGCTTACTCTGAAGATcatgtgtgccaaatttggtgatgactGGAAAAAAGTTGTAGGAGGAGGTAgcgaaaaaaacagtttttgacaaaatccactAGAGCATTGGTAACACTTGGCCCAAACTTGGCCAAAAAtttgttccttagaccctccccaatcagtgtgccaaatttcacaacctTTGGTGCCTGGCCCCTGATAAGTATTGTCAATTATAATAGTGATGCTTGCATTGCATAGCAAGCACCACCAGTAAGTATGGACAATTATAAAAGTGATGTTTGCATTGTATAGCAAGcacaactaataataattaactatGATAATAATTCTACAATAGGAACAGtcaaagaagagaaagaggaaagcaatgtgtgcatgtgcgcaAGGGAAAGACAGTGCACGTGTCCATGTGAGAATTCGCACTGagcttataaaaatgaataatcacGAGCCCAGTGAAATATGTGGCCTAGTATGTGAAACGAGGGGAACAATAGGGAATGGAAATATGGTGGTGAGTTTAAGAGACTTGAACATGGTGGATGGCTAGTGAcagaaactataaatatatgtatataaaaatatttccaatgaCAAAAGCTCCAAAGCGCAAAAATGTTAATGGGAATAACGCTTCAGAGTTTGGATCTTATTTGTTCTTGACAAAAACTGAGATCACTGATTGAGTGACCACATTAGTAAGCACAGAGTGAGATCAGATAAATGAGATAAGAAGGAGATCAAAGACAGAGGAAAGGAGATTCACGGTGGTTCATGCGATTCCCTTTGTTTAAAACAATActaatttaaaaacagtttgCAGTTTCAAATTACTCAACACAGTATAACtttgaaagaaataataatgaacacGTTTCCTGCCCAGATGCTCTGCTGAATAATTCGACACCAGTTTGGAAGATCTGGCAGAAGTCCTAGGAATAGTTTGCAAAAGATGGGTTCACATATTAATCAAATTATACGAAAATTTGATTCCAAAATGCACATTATTGTTGCATTAAGCGACTGAAccagaagaaaaaagattatTCCCTGTCCACCTTATTTTACATGCTTGAttataactgaaaaaaatgtatagcaCCCCCAATGGCCAATATGAGTGACaaggcagccttttttttttttttttattcctgggTCACTAGAGGGACCTAGCATTCAAGTTTCATAACAATTGCTCATTTTTAACCCcatcaaatgcctgctgaaaactAATTGGCTGACAGCAGCCATGTTTTCTAAGCGACCAGGTCATCATTAACAATACCATTACCAATTAGGATAAAGATGCAGAATACCAAGTTTCAGCTCAATTGAACTTACAGTTCCTGAGAAATATTTTTCTGAACGTAGCTCTGCCCCTTATTGATGACTATGCCCAAAACTCAGCAGTCCTTCTCAGGACTTTGTCGTGAAGGGGCCTGTGTAGTTTCGTTTAAGTACATACAAAAATCAtaagttacagctgtttgagtgaATTAGACTCTGCCCCATTAGAATTGATTGGCAGGTGGCAGCTATTGTTCATAAATCACAACATTTTTTGACCAATATGGAACCAACTTTGTGAAAACGTGACAAAAATTCTAGGACTAGTTCCCAAAAGTAGGTTTTGTAAAtttatctggtgtcacccagaagaagatGGGCTCCCttatgagtctggttcctctcgaggtttaTTCCTTGTGTCACctctgggagtttttccttgccagcATCACCTCTGGATTGCTTATTAGCGATCTAAATCTATATGCAGATTTCTGGAAAGCTacattgtgacaatgtcctttGTTAATAGCGctatataattaaaattgaattaaatcaaactgaattaTATTCTGATGTTCTCATCAAAAACCACATTATATTCTCATATTCTGATCACAGATTATATGGGATTAGAGAGCCCTTACATAACATAATACATTCACCACACCAgctctgttctttttttaataacaagtATGATATATTTCAGTCTGATCTCCCAAAGCAGCATAATACATAATCAATACTGGCCAAAGTTGTCAGTGACCTACTACTTGAATAGTGATAGTGGATATGTTTTTGCCCTGGTACTTTTAGACTCTAGTCTAAACCTTTAAGCACATATGACACTACAGACCATGATATTTTAACAGACAGGCATGATAACATAGTTAGCATTTGTTAGCATTAAGCATGGtttttcagagcctaaaaaATTACAATATGGTGTTCAAGGTTCTATTTTAATTTCCTTACTGTTCTCCTTTTATATCTAGCACCTAAAGCTGTAATGATTCAGGGTATCGCATCGTATTGTTTGATATGAGGCTCTTTGATACAAGGTTCTCAATTTGATATGACTGAGTATTGAACAATAAATTCAACAGACTGCACAATAAAGTAGgctattgtttatattacattagcATTGTTTACATTAGTCAGTATAGTGAGACAGCAACACGTCATCACGCCACCATAAGGTatttaagaagaagaacaacaaatgaagaaatattcTGAGCACTACTGTGTCCCTCTTTGCACAACATCTTCAGAAATGAACAacttcactattattattattattattattattattattattattattattgttgttggaTCAGTACTGACCTTCTTTTCCCAGACCTTGTCCCACAGTGTAGCCCATTTTCTGCAGCAATGCAAACCCTTTATTCTCACTGCTTAGAGAGCTCTGCAGAGCAGCATCTCGTCTGTTCTGCTCTTGTTCCTTGTAGCTTTTCTGCTGGTTAAgaatatttttctctttgtgcAAAGTCTCTCGCCTTAGAGTCTCCTTTAAACGTTTCACCATTGGCATGCCAGGCCGAACGTCCACT

Function

symbol description
gpatch11 Predicted to enable nucleic acid binding activity. Predicted to be located in chromosome, centromeric region. Predicted to be active in kinetochore. Orthologous to human GPATCH11 (G-patch domain containing 11).

NR:

description
PREDICTED: G patch domain-containing protein 11

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61895 True 3635 lncRNA 0.36 2 25185835 25189496

Neighbor

gene id symbol gene type direction distance location
LOC113542016 sipa1l2 coding downstream 95013 24812974 ~ 25090822 (-)
arid4b arid4b,LOC107690809,LOC102789854 coding downstream 869407 24190418 ~ 24316428 (-)
mrpl14 mrpl14,LOC102799944 coding downstream 1318305 23862719 ~ 23867530 (-)
mgme1 mgme1 coding downstream 1344975 23837939 ~ 23840860 (-)
kifc1 kifc1,LOC108261151,LOC108261048,LOC108261613 coding downstream 1435074 23727152 ~ 23750761 (-)
dnajc12 dnajc12 coding upstream 118810 25308306 ~ 25330202 (-)
msh6 msh6 coding upstream 305180 25494676 ~ 25504756 (-)
LOC113541965 zc3h6,LOC102799538,LOC100704674 coding upstream 496188 25685684 ~ 25697851 (-)
mertka mertk coding upstream 560557 25750053 ~ 25770046 (-)
lhcgr LOC108262811,LOC108430256 coding upstream 583391 25772887 ~ 25791400 (-)
G52310 NA non-coding downstream 175532 25002120 ~ 25010303 (-)
G52304 NA non-coding downstream 261983 24920672 ~ 24923852 (-)
G52300 NA non-coding downstream 303879 24879497 ~ 24881956 (-)
G52283 NA non-coding downstream 396740 24788891 ~ 24789095 (-)
G52282 NA non-coding downstream 397976 24787513 ~ 24787859 (-)
G52438 NA non-coding upstream 145386 25334882 ~ 25335127 (-)
G52451 NA non-coding upstream 169125 25358621 ~ 25360911 (-)
G52452 NA non-coding upstream 172025 25361521 ~ 25362463 (-)
G52453 NA non-coding upstream 173492 25362988 ~ 25364044 (-)
G52474 NA non-coding upstream 260174 25449670 ~ 25450393 (-)
herc4 herc4,LOC107689351 other downstream 449947 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 533988 24451986 ~ 24651847 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other downstream 1053352 24108351 ~ 24132483 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other downstream 1145735 24016896 ~ 24040100 (-)
G51576 NA other downstream 1731618 23447908 ~ 23454217 (-)
LOC113542183 NA other upstream 720522 25910018 ~ 25910119 (-)
dst dst other upstream 1868401 27057897 ~ 27195955 (-)
zgc:163080 tmem14a other upstream 2348273 27537769 ~ 27541331 (-)
G54269 NA other upstream 3243724 28433220 ~ 28435411 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 4689799 29879295 ~ 30111161 (-)

Expression


Co-expression Network