G52452


Basic Information

Item Value
gene id G52452
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25361521 ~ 25362463 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU61996
CCACACTAAAGAATGTTAGTGGTGTGAAACCGCTGAAAATTCAAAAGCAGCAACATTGATGACGTATATCATTACTTCTTCTAGTTAATCATGTTACATGATTGCTCAAGTGAGCTtttgccagtcaaaagtttaaaaacaccagatttatattaataaaaactgtaaaatatggcTTCTATGATTAGCTGTGTCCAAACTTTTAACTGGTATTGGTTTGAACTGGCTTTAACTGGTAACTTTTAACTAGAACCTTCACTATCTGTGGAGCAGAGTGCATGcctttaacttttaaaaaaaaggccctCCAAACTAAGAGAGGGGGAAGGAGCTTAGGTATTTTTGTGTTGGTGGGTGATTTATATGCATTCAAATAAAGCTCCTTGGTTCACTCACATTCAGTCTCTAAGTGTGATTCTAAGTTTTTACTTGGTGACCTGTAGTCACAatgcagaaatacagtaaaatcAACATGATGAAGCCATCATAGCATAGTAACCCATAGCACCTAAACATTCTGCTCTTTCagaagacaataaatacatcaCCAATTATTGTCCAATTCATCAAAAGCATCAGtccaatatattttttgacaaTTATTTGCTAATGcactacaataaaaaataatggagGTCTTACAAATGATCACACTGCATCGAATCTCTTCTTCCCCTTTCGACCCTTCAAGCTGAAGTGACACCATACATTATTTGTGGCTAGGTTTCACAGAATTCTCTTCACAGCATCAGCTGGAGGTGTTCCTCCAAGCAgactaaaaaaatacattacgAATGACAAATTAACACAGTTCTTCTGTTTTGCTGCAAGGAGTCTCCAGGATTTTCTCAACTGCTAGGTAGCTTTGTGAAACAAGACACCTAAAGATGCTTTTGTTGAAAGTTTCTGTTCCAAGTTGTCCAGTCAGAGTAATACGGCATGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU61996 True 943 lncRNA 0.37 1 25361521 25362463

Neighbor

gene id symbol gene type direction distance location
dnajc12 dnajc12 coding downstream 31319 25308306 ~ 25330202 (-)
LOC113542016 sipa1l2 coding downstream 270699 24812974 ~ 25090822 (-)
arid4b arid4b,LOC107690809,LOC102789854 coding downstream 1045093 24190418 ~ 24316428 (-)
mrpl14 mrpl14,LOC102799944 coding downstream 1493991 23862719 ~ 23867530 (-)
mgme1 mgme1 coding downstream 1520661 23837939 ~ 23840860 (-)
msh6 msh6 coding upstream 132213 25494676 ~ 25504756 (-)
LOC113541965 zc3h6,LOC102799538,LOC100704674 coding upstream 323221 25685684 ~ 25697851 (-)
mertka mertk coding upstream 387590 25750053 ~ 25770046 (-)
lhcgr LOC108262811,LOC108430256 coding upstream 410424 25772887 ~ 25791400 (-)
anapc1 anapc1 coding upstream 560567 25923030 ~ 25966974 (-)
G52451 NA non-coding downstream 610 25358621 ~ 25360911 (-)
G52438 NA non-coding downstream 26394 25334882 ~ 25335127 (-)
G52373 gpatch11 non-coding downstream 172025 25185835 ~ 25189496 (-)
G52310 NA non-coding downstream 351218 25002120 ~ 25010303 (-)
G52304 NA non-coding downstream 437669 24920672 ~ 24923852 (-)
G52453 NA non-coding upstream 525 25362988 ~ 25364044 (-)
G52474 NA non-coding upstream 87207 25449670 ~ 25450393 (-)
G52477 NA non-coding upstream 97370 25459833 ~ 25460379 (-)
G52509 NA non-coding upstream 150954 25513417 ~ 25513806 (-)
G52532 NA non-coding upstream 231773 25594236 ~ 25594907 (-)
herc4 herc4,LOC107689351 other downstream 625633 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 709674 24451986 ~ 24651847 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other downstream 1229038 24108351 ~ 24132483 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other downstream 1321421 24016896 ~ 24040100 (-)
G51576 NA other downstream 1907304 23447908 ~ 23454217 (-)
LOC113542183 NA other upstream 547555 25910018 ~ 25910119 (-)
dst dst other upstream 1695434 27057897 ~ 27195955 (-)
zgc:163080 tmem14a other upstream 2175306 27537769 ~ 27541331 (-)
G54269 NA other upstream 3070757 28433220 ~ 28435411 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 4516832 29879295 ~ 30111161 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G422088 NA non-coding NC_048569.1 CM023223.2 59663321 ~ 59664610 (-)