G52474


Basic Information

Item Value
gene id G52474
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25449670 ~ 25450393 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU62026
AATAGCCTCCTTGGACTCCTGCGAGCTAAGACGCTCCCAGATGATGCGCAGCGCGGCGGAGAGATGGCCAGCCGCAGTGGAGACGCTTCTGCTGAGAAAGTGAGCTGCTGTGCTCGCTAAATTGCTGCCGAGGAGCCGGAGGAGCGCCGAGCGGATCAAGAGGAAAACAGCGGgcatgctgagagagagagagagagagagagagagaggagcaggaggaaAGGGAAGCTTTGGTGAATGGGGGATGAAGTCACCGTCAAGGCCTTCGTCAGCTCGAGCGTGAGAACGAGGGAAAGTCTCCGGCTGTCGAAACGTCCTGTGAGCGCAGAGAGAGCGTGGAGATGAAAGAGCCAAAGACTGAGAGAAACAAGGACGCACAACCCTCTCGAACCCTCTGAAAAGGAGTCTCAAACAAAAGCATATACTGCTTCTCTTGCCTGTCCTCTAACCATGCTgagaataacaataataataaaaaaaaatcaaaagaaaaatgaaagatacGGGATGTTCCGTCTTCCTTTAAAAACTTGGGTAGTGGCCTTACAGACAAAAATTGTGGTCATCAGGTATAGCTTGCAATCTCTTTAGATCAAATAGCCTTATAAACCTAGTGGCCTCACCAAACAATTAAGTCTTGACAGTAGTCTTGACAGTAAGGACAACTGGGGAAATGAAGCAGttaaactgaagaaaaagaGATGCGCGACTTCGTTGTCCGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62026 True 724 lncRNA 0.49 1 25449670 25450393

Neighbor

gene id symbol gene type direction distance location
dnajc12 dnajc12 coding downstream 119468 25308306 ~ 25330202 (-)
LOC113542016 sipa1l2 coding downstream 358848 24812974 ~ 25090822 (-)
arid4b arid4b,LOC107690809,LOC102789854 coding downstream 1133242 24190418 ~ 24316428 (-)
mrpl14 mrpl14,LOC102799944 coding downstream 1582140 23862719 ~ 23867530 (-)
mgme1 mgme1 coding downstream 1608810 23837939 ~ 23840860 (-)
msh6 msh6 coding upstream 44283 25494676 ~ 25504756 (-)
LOC113541965 zc3h6,LOC102799538,LOC100704674 coding upstream 235291 25685684 ~ 25697851 (-)
mertka mertk coding upstream 299660 25750053 ~ 25770046 (-)
lhcgr LOC108262811,LOC108430256 coding upstream 322494 25772887 ~ 25791400 (-)
anapc1 anapc1 coding upstream 472637 25923030 ~ 25966974 (-)
G52453 NA non-coding downstream 85626 25362988 ~ 25364044 (-)
G52452 NA non-coding downstream 87207 25361521 ~ 25362463 (-)
G52451 NA non-coding downstream 88759 25358621 ~ 25360911 (-)
G52438 NA non-coding downstream 114543 25334882 ~ 25335127 (-)
G52373 gpatch11 non-coding downstream 260174 25185835 ~ 25189496 (-)
G52477 NA non-coding upstream 9440 25459833 ~ 25460379 (-)
G52509 NA non-coding upstream 63024 25513417 ~ 25513806 (-)
G52532 NA non-coding upstream 143843 25594236 ~ 25594907 (-)
G52555 NA non-coding upstream 219573 25669966 ~ 25671990 (-)
G52564 NA non-coding upstream 224683 25675076 ~ 25675316 (-)
herc4 herc4,LOC107689351 other downstream 713782 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 797823 24451986 ~ 24651847 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other downstream 1317187 24108351 ~ 24132483 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other downstream 1409570 24016896 ~ 24040100 (-)
G51576 NA other downstream 1995453 23447908 ~ 23454217 (-)
LOC113542183 NA other upstream 459625 25910018 ~ 25910119 (-)
dst dst other upstream 1607504 27057897 ~ 27195955 (-)
zgc:163080 tmem14a other upstream 2087376 27537769 ~ 27541331 (-)
G54269 NA other upstream 2982827 28433220 ~ 28435411 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 4428902 29879295 ~ 30111161 (-)

Expression


Co-expression Network