G52509


Basic Information

Item Value
gene id G52509
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25513417 ~ 25513806 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU62072
GCGGAAACTCAAtgactacgtttacatgcacatcagtattccgatattaatcggaatttggcaatattgtagtgtaatggcttgggactgcgattgctgtggtggctttggggctgcagttgccacgagcaccttcgtactcaggactccatcagtggacagtggatagattttaaccaaccggacatcttgcgaaaactgtgatgaatttactggttgcacatttgcactatttgtccatatagtgcacaataatagaagggatttatttataattgcactatctgttgcacccagatgaggatggattcccattagagcctggttcctctcaaggtttcttcctcatatcgtctcagggagtttttccttgccaccgtcacctctggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62072 True 390 lncRNA 0.45 1 25513417 25513806

Neighbor

gene id symbol gene type direction distance location
msh6 msh6 coding downstream 8661 25494676 ~ 25504756 (-)
dnajc12 dnajc12 coding downstream 183215 25308306 ~ 25330202 (-)
LOC113542016 sipa1l2 coding downstream 422595 24812974 ~ 25090822 (-)
arid4b arid4b,LOC107690809,LOC102789854 coding downstream 1196989 24190418 ~ 24316428 (-)
mrpl14 mrpl14,LOC102799944 coding downstream 1645887 23862719 ~ 23867530 (-)
LOC113541965 zc3h6,LOC102799538,LOC100704674 coding upstream 171878 25685684 ~ 25697851 (-)
mertka mertk coding upstream 236247 25750053 ~ 25770046 (-)
lhcgr LOC108262811,LOC108430256 coding upstream 259081 25772887 ~ 25791400 (-)
anapc1 anapc1 coding upstream 409224 25923030 ~ 25966974 (-)
LOC113542170 fbxo5,mtrf1l,LOC106904956 coding upstream 487624 26001430 ~ 26011780 (-)
G52477 NA non-coding downstream 53038 25459833 ~ 25460379 (-)
G52474 NA non-coding downstream 63024 25449670 ~ 25450393 (-)
G52453 NA non-coding downstream 149373 25362988 ~ 25364044 (-)
G52452 NA non-coding downstream 150954 25361521 ~ 25362463 (-)
G52451 NA non-coding downstream 152506 25358621 ~ 25360911 (-)
G52532 NA non-coding upstream 80430 25594236 ~ 25594907 (-)
G52555 NA non-coding upstream 156160 25669966 ~ 25671990 (-)
G52564 NA non-coding upstream 161270 25675076 ~ 25675316 (-)
G52714 NA non-coding upstream 216639 25730445 ~ 25730870 (-)
G52716 NA non-coding upstream 222772 25736578 ~ 25738936 (-)
herc4 herc4,LOC107689351 other downstream 777529 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 861570 24451986 ~ 24651847 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other downstream 1380934 24108351 ~ 24132483 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other downstream 1473317 24016896 ~ 24040100 (-)
G51576 NA other downstream 2059200 23447908 ~ 23454217 (-)
LOC113542183 NA other upstream 396212 25910018 ~ 25910119 (-)
dst dst other upstream 1544091 27057897 ~ 27195955 (-)
zgc:163080 tmem14a other upstream 2023963 27537769 ~ 27541331 (-)
G54269 NA other upstream 2919414 28433220 ~ 28435411 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 4365489 29879295 ~ 30111161 (-)

Expression


Co-expression Network