G52683



Basic Information


Item Value
gene id G52683
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 25888551 ~ 25888782 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU62296
aatttatgcatgaaagggttaagaATGCATTTTTTGTTCCTATTTATAAGCACAaaatcaaaagacattatgtttgtaaatttgaagtggctCTATACagtatgcactggaagtatgtatattaaaaaaaacaaaaactaaagtgtctgaatacttatttccctcacTGCACAATGTAGTTTTGCAAGCCAGACTTCTGTATGTATGTTAAGGAAAAGAAATCTGCTTCTCA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU62296 True 232 lncRNA 0.31 1 25888551 25888782

Neighbor


gene id symbol gene type direction distance location
tmem87b tmem87b,LOC107688162,LOC107597636,LOC107585411 coding upstream 142661 25730463 ~ 25745890 (+)
LOC113541966 fbln7,LOC107679196,LOC107754577,LOC107733340,LOC107585467 coding upstream 163281 25697860 ~ 25725270 (+)
LOC117596833 NA coding upstream 202770 25676862 ~ 25685781 (+)
itga9 itga9,LOC107679186,LOC107688464,LOC107585444 coding upstream 216547 25597285 ~ 25672004 (+)
kcnk12 LOC108430255,LOC107679129,LOC107688640,LOC107585442 coding upstream 350226 25515217 ~ 25538325 (+)
vip vip,LOC108262931,LOC107735294 coding downstream 93817 25982599 ~ 25987144 (+)
slc29a1a LOC100304808,LOC108430281,LOC107655740 coding downstream 127838 26016620 ~ 26063912 (+)
LOC113542099 ate1 coding downstream 224863 26113645 ~ 26202559 (+)
fgfr2 fgfr2 coding downstream 361357 26250139 ~ 26288902 (+)
LOC113542124 LOC108263832 coding downstream 742783 26631565 ~ 26635213 (+)
G52483 NA non-coding upstream 404360 25483803 ~ 25484191 (+)
G52456 NA non-coding upstream 507776 25378353 ~ 25380775 (+)
G52406 NA non-coding upstream 595280 25293033 ~ 25293271 (+)
LOC113542024 NA non-coding upstream 599964 25265631 ~ 25288587 (+)
G52363 NA non-coding upstream 632519 25255512 ~ 25256032 (+)
G52873 NA non-coding downstream 332531 26221313 ~ 26221544 (+)
G52858 NA non-coding downstream 367860 26256642 ~ 26344302 (+)
G52884 NA non-coding downstream 474657 26363439 ~ 26363733 (+)
G52885 wdr11 non-coding downstream 477410 26366192 ~ 26369260 (+)
G53080 NA non-coding downstream 639625 26528407 ~ 26533502 (+)
bcl2l11 bcl2l11 other upstream 24205 25850600 ~ 25864346 (+)
acoxl acoxl other upstream 41648 25801972 ~ 25846903 (+)
golga4 golga4 other upstream 293615 25562402 ~ 25594936 (+)
b3galnt2 b3galnt2 other upstream 1486097 24350184 ~ 24402454 (+)
LOC113540163 NA other upstream 1830653 24055154 ~ 24057898 (+)
G53328 NA other downstream 1097196 26985978 ~ 26992711 (+)
znf451 znf451 other downstream 1309127 27197909 ~ 27207245 (+)
pde10a pde10a other downstream 2312253 28201035 ~ 28301823 (+)
G53692 NA other downstream 2558595 28447377 ~ 28448311 (+)
LOC113542011 glyat,LOC108263175,LOC108263176 other downstream 2577306 28466088 ~ 28496606 (+)

Expression



Co-expression Network