G53048 (fgfr2)


Basic Information

Item Value
gene id G53048
gene name fgfr2
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26273916 ~ 26276092 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU62708
CCTTCTGTGCCTCTCAAAGGCCGCCTGTGTCTGGCCTGAGTCTGCCacagataatcaatgttatgtTTTCCAGATAATCGATGTTATGTTTTTTCCACCATGCTAAATGTTAACATTCCACACTGGCACGACGAGCctgagagaaacacaaagactTCATATAACGTATCTTACGTAGAGCGGGATGATCACAGatcaaaataaacataaaaaagaaaaagttcatTTGAAACTTTCATAGAATCTCGGCAATagtctttggggaaaaaaactggcTTTGAGCAGGATTAGTGTTCAAACTTACATAAAGGGGTTTCCCCTTCACTTGGAGAGCACAAAGGAAAGAAAGTGTTCCTCATGGCTCTACACAGTCAGAGTGCATGCTTGCTGTCCACTGAGAGCTAAACACCTTATTAATCACACTGTGTAGTGACAAAATACTTTTTACTGGCCTGTTTTTCCCTCCATCACCTCGCTAAATAAAGACTTGGCTGCAAGACCGAGTTGAAAAAAATGTTACGCTCTTGTTTTCCTCCCCATTCACTGACAACTGAGCTTCCAGCTGCTTTTTCATACAGCTACTAATCTAATTGCGCAGATCAAGACTGGCATGAGCTACACATTTCTCTATGGCTAATCAAAGCTAATCATCAGGAGAGACAAAGCAGTACGTGATATCTATAAGCCGAgcgggagaaaaaaaaacgcaggTCAGTCAAAGAATAATGGGGCGATAACAGCAAAAGACTTGAATTGTATCCTGAATGATTAATTGTTCTTTACAGCAACATTACTCAACTTAAATCATTAGGCATAATGAGGGCTAGACAATGTAATGAGGTAGTACGATAATGGCGTAACTCGTATAAAGTTGCCGATCACGCCAACAGCTTGCCTCAATCTGACTCAATGTTTGCTTAGCAACCTGCTTGATGTTTTTCAAGTACTGTAAAGTATTGTGCTGTTCTGTAATACGATGTGAGTATATCgtattgtatgtatgtacataagCATGGAGtaatatttcattacaaaaagTCAACAGGCTCATGCTAGACTAATACACAGGCACAGACTGCTCACTTGTCTCTGGAAAATTCCCAGCGAGGATCTTCGGGGAGTTCATACTCAGGGATGATGTGTTCATGCTCGGAGCTTCTGCGTGTCGTGATTCTCACCAGCGGCGTGCTGGAGCTCATCGAGGAGCTCGAGTCAGCTGAAACTGTTACCTGGCGGCGCAGTGGGATCTGTTTGGTGAGCTTGTGTACAGCAGGTTGGCCTCCGAAATCAGGCTTCTTGATGGACGTCCGCATTCTGCAGACAACTACGATCACCACCATGCAGGCGATGAGGAACACGCCAATGCAGTAGATGGCAATCTCTATGTAGTCCGGAGGATATTCAGGCTCTGCGATGTTCTTCTCGGCTGAATCAGTGT

Function

symbol description
fgfr2 Enables fibroblast growth factor binding activity. Acts upstream of or within several processes, including cell proliferation in midbrain; determination of left/right symmetry; and regulation of hematopoietic stem cell differentiation. Predicted to be located in Golgi apparatus; cytoplasmic vesicle; and plasma membrane. Predicted to be integral component of membrane. Predicted to be part of receptor complex. Predicted to be integral component of plasma membrane. Is expressed in several structures, including anterior neural rod; digestive system; mesoderm; nervous system; and trunk vasculature. Human ortholog(s) of this gene implicated in several diseases, including Beare-Stevenson cutis gyrata syndrome; Jackson-Weiss syndrome; LADD syndrome; reproductive organ cancer (multiple); and synostosis (multiple). Orthologous to human FGFR2 (fibroblast growth factor receptor 2).

NR:

description
PREDICTED: fibroblast growth factor receptor 2 isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62708 True 1438 lncRNA 0.43 2 26273916 26276092

Neighbor

gene id symbol gene type direction distance location
tmem63ba LOC108263178,LOC103024235,LOC107733349,LOC107655531,LOC107679181 coding downstream 163507 26076592 ~ 26110409 (-)
LOC113541884 s39a9 coding downstream 200162 26066974 ~ 26073754 (-)
LOC113542170 fbxo5,mtrf1l,LOC106904956 coding downstream 262136 26001430 ~ 26011780 (-)
anapc1 anapc1 coding downstream 306942 25923030 ~ 25966974 (-)
lhcgr LOC108262811,LOC108430256 coding downstream 482516 25772887 ~ 25791400 (-)
LOC117596837 NA coding upstream 74037 26350129 ~ 26351151 (-)
wdr11 wdr11,LOC102787883 coding upstream 90086 26366178 ~ 26467381 (-)
plpp4 plpp4 coding upstream 252914 26529006 ~ 26620986 (-)
lhb LOC100304481,LOC108425477 coding upstream 353158 26629250 ~ 26629878 (-)
arfgef3 arfgef3,LOC107751324,LOC107688785 coding upstream 363457 26639549 ~ 26668018 (-)
G53049 fgfr2 non-coding downstream 11093 26258430 ~ 26262823 (-)
G52981 NA non-coding downstream 156710 26116888 ~ 26117206 (-)
G52775 NA non-coding downstream 352852 25889508 ~ 25921064 (-)
G52792 NA non-coding downstream 356965 25915462 ~ 25916951 (-)
G52771 NA non-coding downstream 407829 25865886 ~ 25866087 (-)
G53051 NA non-coding upstream 10832 26286924 ~ 26355796 (-)
G53065 NA non-coding upstream 89046 26365138 ~ 26365358 (-)
LOC113542010 NA non-coding upstream 229675 26505767 ~ 26506244 (-)
G53175 NA non-coding upstream 251177 26527269 ~ 26528340 (-)
G53178 NA non-coding upstream 258715 26534807 ~ 26535023 (-)
LOC113542183 NA other downstream 363797 25910018 ~ 25910119 (-)
herc4 herc4,LOC107689351 other downstream 1538028 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 1622069 24451986 ~ 24651847 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other downstream 2141433 24108351 ~ 24132483 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other downstream 2233816 24016896 ~ 24040100 (-)
dst dst other upstream 781805 27057897 ~ 27195955 (-)
zgc:163080 tmem14a other upstream 1261677 27537769 ~ 27541331 (-)
G54269 NA other upstream 2157128 28433220 ~ 28435411 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 3603203 29879295 ~ 30111161 (-)
G55209 LOC108263435 other upstream 3835739 30111831 ~ 30122822 (-)

Expression


Co-expression Network