G53051


Basic Information

Item Value
gene id G53051
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26286924 ~ 26355796 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU62711
GTAAAAAAACAtaaaaaaaaaaaaaatcaaatttaaaaagtattattggGTCCACAATCTCTATTTAAGAGCTTGGTCACGTTttttgagagagtgtgtgagtgtacacattttgtgtatcatcaccatcacacacttacTAGTTCATCTTAAAGGACAGCAGCATTGCCGGGAATCCCTGCATCCCATGCTCCGTAAGTCCAGCGGGAGCAGTGAGGGAAGGGAACGAGGCAAAAAGTAGAGGAAGACAAGAGTTTGAGGAGTCACAGGTCTCCTGGTGGTGCATCGTGAGCTTCCAGGAGCCTCATGTTTTCATGCCACCGTTGATGTGCTGGTATTTGGGAAGGCACGGCTCGTCCGGTAAGGGCTCGTGAGAGAACACTGAGTCGTCTCCAGACGAGCAAGAGCTACGAGTGTCCGGGAAACACGGCGAGTACTGCTCTGTTGGAGCGCACAGGTCAATGTATTCCTACAGAAAGCGAGAGAAGACTCAGTCTTAAACACACATAAAGCAAGAGAACACAACCCTATGCACATCCTTTATACACATCCGTATTctgtcataaatgtaaatttcctttcaaatattttacacagatttttcaaaatggcagcTATAAAAGCAGCTCCTTGTTTA

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko04512 ECM-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU62711 True 637 lncRNA 0.44 2 26286924 26355796

Neighbor

gene id symbol gene type direction distance location
tmem63ba LOC108263178,LOC103024235,LOC107733349,LOC107655531,LOC107679181 coding downstream 176515 26076592 ~ 26110409 (-)
LOC113541884 s39a9 coding downstream 213170 26066974 ~ 26073754 (-)
LOC113542170 fbxo5,mtrf1l,LOC106904956 coding downstream 275144 26001430 ~ 26011780 (-)
anapc1 anapc1 coding downstream 319950 25923030 ~ 25966974 (-)
lhcgr LOC108262811,LOC108430256 coding downstream 495524 25772887 ~ 25791400 (-)
wdr11 wdr11,LOC102787883 coding upstream 10382 26366178 ~ 26467381 (-)
plpp4 plpp4 coding upstream 173210 26529006 ~ 26620986 (-)
lhb LOC100304481,LOC108425477 coding upstream 273454 26629250 ~ 26629878 (-)
arfgef3 arfgef3,LOC107751324,LOC107688785 coding upstream 283753 26639549 ~ 26668018 (-)
elovl5 elovl5 coding upstream 331329 26687125 ~ 26706755 (-)
G53047 NA non-coding downstream 644 26250355 ~ 26286280 (-)
G53048 fgfr2 non-coding downstream 10832 26273916 ~ 26276092 (-)
G53049 fgfr2 non-coding downstream 24101 26258430 ~ 26262823 (-)
G52981 NA non-coding downstream 169718 26116888 ~ 26117206 (-)
G52775 NA non-coding downstream 365860 25889508 ~ 25921064 (-)
G53065 NA non-coding upstream 9342 26365138 ~ 26365358 (-)
LOC113542010 NA non-coding upstream 149971 26505767 ~ 26506244 (-)
G53175 NA non-coding upstream 171473 26527269 ~ 26528340 (-)
G53178 NA non-coding upstream 179011 26534807 ~ 26535023 (-)
G53179 NA non-coding upstream 179287 26535083 ~ 26535294 (-)
LOC113542183 NA other downstream 376805 25910018 ~ 25910119 (-)
herc4 herc4,LOC107689351 other downstream 1551036 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 1635077 24451986 ~ 24651847 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other downstream 2154441 24108351 ~ 24132483 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other downstream 2246824 24016896 ~ 24040100 (-)
dst dst other upstream 702101 27057897 ~ 27195955 (-)
zgc:163080 tmem14a other upstream 1181973 27537769 ~ 27541331 (-)
G54269 NA other upstream 2077424 28433220 ~ 28435411 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 3523499 29879295 ~ 30111161 (-)
G55209 LOC108263435 other upstream 3756035 30111831 ~ 30122822 (-)

Expression


Co-expression Network