G53080


Basic Information

Item Value
gene id G53080
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26528407 ~ 26533502 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU62740
ctcacattagtaatcttTTAGCCCGTGCTCTCATCTCGATTCACTTTTCTCACTTGAAAGATGCCgcctctatttttttatttacaagtaAATAGAGAaagttttgagttcattaatgtgaaacaaaatagatcaatgtacactatatgaccaaaagtatatggacatcTAACCATCAATCTCATATTTGAACATTCCAAATCCACGAGCATTAACATGCTGTTTATCCGACTTTTACTGTTATAACAGCctgcactcttctgggaaggctttccgctagattttggagcgtcgCTGTGGGGATTTCTGCCCATttagtcacaagagcattagtaaggtcaGGCATTTATGTCTAatgagaaggcctggtgtgTAGTCAGTTCATCCccaaggtgttcagtggggttgaggtcagggctctgtgcaggtcactcaggttcttccacaccaaccctGGAAAGCCATGTCTTTAcagagctcgctttgtgcacaggggcattgtcatgctggagcatgtttgggccccttagttctagttaaaggaaaatcttaatgctacagcaaagacaaatacaaagacatcctatacaattgtgtgcttctaactttgtggcaacagtttggcgaaggcccacatatgggcaTGATGGTccagtgtccacaaacttttggccatatagtgtgtgtttaaagttaacatcagttaactaaaTTTATCAGGGGATGAACCAAAAAAATGTGGCCAAAATGACTTGAAAGTGGCACAaaattttgaccaaaaaaagattaaataggagTACAActaagtgtcaaatctaacacctTACAAATCATTGTAACGGGAATGATCATTAGAAAGCTCTCTGCTCTCCTGCAGGGTCAGCACAGATGTGTTCCAGCAGTGCACTCAGGTCCATCGTAGTAGAAACGTGAGAGCGTGTATATACAGGGTTTCACAGTAACCACCTATTGcttaggggaaaaaagctgcTGCTTGCCTGTTTTAGGAATGCTGTAGAGACTAGAAATGTTTACAggcacatatatgtatatatatatatatatacacacacacacacactcgtttcTATTGTAGAATAGTGAATAGTTAAAGGGCTATATTGGAAAATGTCTATGCATCATTCCTCTTCAAGGTTGGCAGATCTGCACCTTGTATTTAATGTAACAAACTGTTAAATTAAGTGTTAACGTTCCATTATATTCCAAATATATATTCCATTGTTGTTGATCCATTgatcccgttaggggtcaccacaatggatcattggtccgtgtatttgattcggcacagtttttatgctgcatgcctgatgcaaccctccccagttgtaTCTGGGCttggactggcactgagagcacactgttgcatgcaactcCAGTGGTTGAGGTTGGAATTGAACCtgggctgcagcagtgagagcgctgtggcctgaCCAGttgtcctccagggaccccagaTATATATTCTTTTATACATAATTAATTCTAATCAGAATTACAGGCTCTGAATTATATCCAAATTGTCACGATGTAGTGTCCTGAGGGCAATAAATCCCTCTGTAAAATGTGTAACGTGTGTAACAAAACATCAAGACAACAGATCAGAGGAAGTTCTTGAACAAGCAATGCCTCTGACAAAGACTTCAGCCGCCTGCATGTAGCTCGGCTGAGGATTGCAATAGCAAGTCTTCGGATGATGTAATCAGAAGTCATGTTCAAACAGGCCTGAGGTCTGTACTTGCCAGCAGACATTTGCTTAAGGGTTCGCTTTTAGCAATCACACAGTCAGTGACACAGTGGGGATTTTTCTTATGGGAATAGTCCAGTCATGGATATTGTTCACTTCAACAATTCATACGACTTTGCACAAGCCAACTTGTATGAAAAGTTACAAATAGTTAGGCCAAGGAGTGGAATCTTTCATTTGCAGCTTACAATACAACTTTATCCACTCcgttttttattaattcacaaGATCAGGTACTGTAAAAGGTCCATGAAAGAAACAGTGGAGAGATAAGCACTGTTTTAGAACAGGTGTAGATAAAGTTGAATCAAAGTATAGAACTGTCACTTATAGTTCACTCTGTTTGTCTTCCAAATGCAGCAGTGCTCCTTCACcacttatttctttctctcaccagtctatgtgttttgttttgcttttttttctggtcaCTGGCAATGATATTGCACAGTTTTAGCCCGTAAATTGCACAAACccttttgtcttttaaaatgtgacAGCAAAGGTAATTAAATTCCTTTAAAACACCCACAGACGCCTGTCAGAGAACAGAGCTATATGTTAAGAAACTTGTGGTGCATAGCCATAGTCCTTTGTTTGCATATTCCCATttgtaaaagagaaataaatagagCAGTTGCATGAGGCTAACTCTCTAACAGCCTAAAACAGCTATATAGGTAATGTTTCAAAAGCTTACACTCTATTGAAAGTAACATAGCTCTatgctgtaatgctgtaaaaCGTATTCAAAAACGTTTTGAATGTTtgttatgtttgtgtattttcatgtcattttctttttttctcctcaataATGACAGCAGAGCCACTCGACATATGAATCCGCAGTGATTAAcaatcattattaattaatcatcTCCATCTCGCATAAGTAATCTTTCGGCCGGTGCTTTCGGCTCGTCTCGGTTTTCTCGCTTGAAAGATGTGGCCTTGCTTTCTATCAAGGTAAACAGAGTCTGTTCTGAGTTctgtaatgtgaaataaaatctttcGATGTATGTTCGACTTATCTAACCCAAGACAAGTATtgagttaacatcagttaactatatttattaaggaTGCACCGAAAAGATTTTGGCTTAATATTGTCAAAAACATCACTTTTcatccaaaagtgaaaaaagggaTGAACCTTTTGACAGCAAAATAGATTAAATATGCCTACACAAAAAGTCAAATCTGACACTTTGCAAATCAGTTTAATggtaatattaattataaagtgCTTAAAACACTGTATGCTCTCCTGCAACAGTCAACTCAGACGCGTTCCAACAGCGCAGTCAAGTCAGAAACTGAtggttttacagtaaccaccAGACGCTTGGGGGAAAAATAAGCTGCCGCATGTCTGTTTTAACAGACAACTTTTCCTACTTTGTTATATTCGTCCATGTTCACGGGGTTGCTTTATTTTCCTCTTAGTGAGACAGAAATAGATGACCAGCTAAGTATGATCTGCATTCTCAAAAGTATTAACACTTATTTCCTAGCACTCATAAGAACAACCAGGAAGTATGGTGTAGCAAGCACATTAACTGACAGTGTATAACGTTATATGCAGTGCCATTTAGTAGTTACTTGTCAGACACCAGCTTAAGCTTTTGAGGgatgaaataaaatactgtagCTCTCCATTCAGTTTAATCACCACAGTCTGCCCTATTAAGACACAAGTACTTAGTGGCATGTTAATGAATAATCCCATTAGGGGTTTGATTGTGGCAGGTCACAGCCAGCCCAGGGAACACACTCATGACTAAGTAAGAGCCTGGAAGCTTCCTTTTCCATTCTGCTCTAATGTGCTGATTAACAGTGGCAGCCACTCCTCACATAATGGAAATTAATGCAGGTTCAGATTGGGGTTTCCGCCCTTCtccaacacccacacacacacacacacacacacacacacgcacacgcacactctGCGTACTTGATATCAACCATACAGTGTTTAGCTGTCATTTGTATTCAAATTTCTATGCAACCCTGGCAtgacaaataaaaggaaattgGCGGGCGAATGAAGAAATAAGATAATAAGGGAGATCAAGAGAAAGGGGAtagagaaaataagaaagaggcagagagacagagtcagTGTGGCACCACTGCCACTGATAATTTGTGAGgaatagagacagagactggTGGGGGGGGGGATAGAATAAAGAAATAGGGAAGTATTGACTGTCGAGCCAGGAGTATGTggcagaaaataagaaaaataaacagaagaggTGAAGGACTCAGGTCAAAGTAAGTCAAACTATTGAAACCGAAAAGAAGGGACAGAGAAATGAGAAGGAGATCTATATATATCTGAATGTTACCATGGACAACCAGCGAGTTCACCAAGTATCTctgaaaagcattttttttctgcccagtgtaataaaacaaataagtcAGAACTGGAAAAGTAATgagaaaagataaaagaaacaTCAAAATAGACAGATTGTGACTTCTATTACAATGCCTTCCCTCCAATCACCtcacattattatacatattatacactGAACATTTCCATATCTGTAATAGTAAAATACAACATGCTGGACTTTGCCTTCGTTTTGTGCTATCATTAATCATCTCAATTTATACAGGCCACTTCAACgagtcttcctctctctttattaTTCTCTCGTTCCTGCTACACAGAAATGGTCTACACTCGCCATCAACAAGTGTAGTGAGTGTAAATGTATCCCAAATGAGGCTAGTAAATCAGTATTAAACACAAGACGGAAAAAGAAAGAGTACCAGTGAAGGATAAAATGAACAGGAACTGGACGACCCACTGGAATGTACAAGAGTCAGCCAGTCTGTGTGGGTCATACCAAGCGGGCGGTGAAGGAGGGGGGCTCCATTAGTCATAGAGGCCCCTCGGTGATGCCCTCCAGAGGCAGGCTCGTGGCATTGTCCGTAGCCTGAGGCACCTCCTGGGAGACTGGCGCATGTCGGGTGGTGCTCAGTGCCAGGCTGGCATAAGGCAGGTGGCAGTCTGTGTGGAGAAAAGGTGGGTAGTGCTGCCGGTAGCAGATGTAGGCAAACAGCAGGCCGATCACACCACCGACAAAGGCGTCTGAGAGGAGAAGAAAGCGTGAAAGGTCACTTTGCGATTGCCTTCCATTACTGATTACACGCATTAGTAACATGTTCCAAATGTCAGCAGTTTGAATAACAAGCAACTATTCGTTAAAATTAAAACTGGaatactgcaaaataaaaacaggtaCCTCAGATGTGAATGTCACGTAACATAAAAAGCCCTTAAATTccaaacattttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62740 True 5096 lncRNA 0.40 1 26528407 26533502

Neighbor

gene id symbol gene type direction distance location
fgfr2 fgfr2 coding upstream 239505 26250139 ~ 26288902 (+)
LOC113542099 ate1 coding upstream 325848 26113645 ~ 26202559 (+)
slc29a1a LOC100304808,LOC108430281,LOC107655740 coding upstream 464495 26016620 ~ 26063912 (+)
vip vip,LOC108262931,LOC107735294 coding upstream 541263 25982599 ~ 25987144 (+)
tmem87b tmem87b,LOC107688162,LOC107597636,LOC107585411 coding upstream 782517 25730463 ~ 25745890 (+)
LOC113542124 LOC108263832 coding downstream 98063 26631565 ~ 26635213 (+)
fbxo9 fbxo9,LOC107712342,LOC107751337 coding downstream 137390 26670892 ~ 26684508 (+)
eloal LOC108263752 coding downstream 193747 26727249 ~ 26736006 (+)
lrrc1 lrrc1 coding downstream 222158 26755660 ~ 26798512 (+)
LOC117596838 NA coding downstream 269693 26803195 ~ 26809508 (+)
G52885 wdr11 non-coding upstream 159147 26366192 ~ 26369260 (+)
G52884 NA non-coding upstream 164674 26363439 ~ 26363733 (+)
G52858 NA non-coding upstream 184105 26256642 ~ 26344302 (+)
G52873 NA non-coding upstream 306863 26221313 ~ 26221544 (+)
G52683 NA non-coding upstream 639625 25888551 ~ 25888782 (+)
G53082 NA non-coding downstream 3760 26537262 ~ 26537467 (+)
G53083 NA non-coding downstream 4732 26538234 ~ 26538520 (+)
G53090 NA non-coding downstream 18573 26552075 ~ 26552285 (+)
G53091 NA non-coding downstream 19016 26552518 ~ 26552722 (+)
G53092 NA non-coding downstream 19434 26552936 ~ 26553152 (+)
bcl2l11 bcl2l11 other upstream 664061 25850600 ~ 25864346 (+)
acoxl acoxl other upstream 681504 25801972 ~ 25846903 (+)
golga4 golga4 other upstream 933471 25562402 ~ 25594936 (+)
b3galnt2 b3galnt2 other upstream 2125953 24350184 ~ 24402454 (+)
LOC113540163 NA other upstream 2470509 24055154 ~ 24057898 (+)
G53328 NA other downstream 452476 26985978 ~ 26992711 (+)
znf451 znf451 other downstream 664407 27197909 ~ 27207245 (+)
pde10a pde10a other downstream 1667533 28201035 ~ 28301823 (+)
G53692 NA other downstream 1913875 28447377 ~ 28448311 (+)
LOC113542011 glyat,LOC108263175,LOC108263176 other downstream 1932586 28466088 ~ 28496606 (+)

Expression


Co-expression Network