Gene
RNA
| Item | Value |
|---|---|
| gene id | G53090 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047597.1 |
| NCBI id | CM018543.1 |
| chromosome length | 33776708 |
| location | 26552075 ~ 26552285 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU62750 | True | 211 | lncRNA | 0.39 | 1 | 26552075 | 26552285 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| fgfr2 | fgfr2 | coding | upstream | 263173 | 26250139 ~ 26288902 (+) |
| LOC113542099 | ate1 | coding | upstream | 349516 | 26113645 ~ 26202559 (+) |
| slc29a1a | LOC100304808,LOC108430281,LOC107655740 | coding | upstream | 488163 | 26016620 ~ 26063912 (+) |
| vip | vip,LOC108262931,LOC107735294 | coding | upstream | 564931 | 25982599 ~ 25987144 (+) |
| tmem87b | tmem87b,LOC107688162,LOC107597636,LOC107585411 | coding | upstream | 806185 | 25730463 ~ 25745890 (+) |
| LOC113542124 | LOC108263832 | coding | downstream | 79280 | 26631565 ~ 26635213 (+) |
| fbxo9 | fbxo9,LOC107712342,LOC107751337 | coding | downstream | 118607 | 26670892 ~ 26684508 (+) |
| eloal | LOC108263752 | coding | downstream | 174964 | 26727249 ~ 26736006 (+) |
| lrrc1 | lrrc1 | coding | downstream | 203375 | 26755660 ~ 26798512 (+) |
| LOC117596838 | NA | coding | downstream | 250910 | 26803195 ~ 26809508 (+) |
| G53083 | NA | non-coding | upstream | 13555 | 26538234 ~ 26538520 (+) |
| G53082 | NA | non-coding | upstream | 14608 | 26537262 ~ 26537467 (+) |
| G53080 | NA | non-coding | upstream | 18573 | 26528407 ~ 26533502 (+) |
| G52885 | wdr11 | non-coding | upstream | 182815 | 26366192 ~ 26369260 (+) |
| G52884 | NA | non-coding | upstream | 188342 | 26363439 ~ 26363733 (+) |
| G53091 | NA | non-coding | downstream | 233 | 26552518 ~ 26552722 (+) |
| G53092 | NA | non-coding | downstream | 651 | 26552936 ~ 26553152 (+) |
| G53172 | NA | non-coding | downstream | 246413 | 26798698 ~ 26799518 (+) |
| G53280 | NA | non-coding | downstream | 381653 | 26933938 ~ 26934265 (+) |
| G53363 | LOC108263596 | non-coding | downstream | 465676 | 27017961 ~ 27018846 (+) |
| bcl2l11 | bcl2l11 | other | upstream | 687729 | 25850600 ~ 25864346 (+) |
| acoxl | acoxl | other | upstream | 705172 | 25801972 ~ 25846903 (+) |
| golga4 | golga4 | other | upstream | 957139 | 25562402 ~ 25594936 (+) |
| b3galnt2 | b3galnt2 | other | upstream | 2149621 | 24350184 ~ 24402454 (+) |
| LOC113540163 | NA | other | upstream | 2494177 | 24055154 ~ 24057898 (+) |
| G53328 | NA | other | downstream | 433693 | 26985978 ~ 26992711 (+) |
| znf451 | znf451 | other | downstream | 645624 | 27197909 ~ 27207245 (+) |
| pde10a | pde10a | other | downstream | 1648750 | 28201035 ~ 28301823 (+) |
| G53692 | NA | other | downstream | 1895092 | 28447377 ~ 28448311 (+) |
| LOC113542011 | glyat,LOC108263175,LOC108263176 | other | downstream | 1913803 | 28466088 ~ 28496606 (+) |
