G53175


Basic Information

Item Value
gene id G53175
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26527269 ~ 26528340 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU62841
AGGTAATATTGAAGAGTTCAAAACATGCAACTGCgaaactgtcaatcattccagatccAGATCTGTCATTTTATTGGGGTGAAAGTGAAGACTTTctctatgtgttttttttgagaGATAACTCATAGCAGCATACtcgtaaaggttggcaggtctgaacTTTTTATGAGAGTGTTTACATGAGGGGCACTACCGTACTTTCCTTAATCTGAACAGGCATTTCTCTGAACAcaagaaaatacatttaatgttttatgtcaCTTATGACACTACTGCAGAAAGCAGTTATTAAATTGCTGACCAGCaaaatcctatttttttttgtttttatggctTGGCAAAGTTTTTgcttaagtaaaatatacagtttttAACTTGTGAGTGGAATTATAGTTTAATTATATGTACTGTAAGTATGGGGATATTGCTCTGGATATTATATTGCTCTctataattgcattattttccaaaagaaataaaagcttcatattATATGTCATTACATTGACATATACCTCCAATATCCAACAAATTTGGCTTGTCATGAgagttttgaaaatgttaatCCATTCTtggtttttattctgtttcctgttcttgatTTAAGAGACATTGGCAGTACtgtagaacagaaaaaaaagtgtttctgcTTCTGTTCCATTTTGGTTGCCGATCCTTCCTGATATGCTCCATGTCCACTTTTATTTCGAGtgttgaaaaatgtgttatagCCGTGTTATAGGATAGGAAGGGAATACTTGTTCACTAGTGTCAAACGGCATGCCAGAGTTAGTTGTTTAAAAGAAACTATTTTATATGGAGACGCATGTCCTGGCCTTGAAAGCATTTTGAGTCgtgtttttgttcattatattgtgtgtgtacaaataGTCTACCTATGAGCCGTATACGAATCTAAACAGTCTTGAATATGGGAAAAATTCTTTACTTATGACTGAATGTTTTTGTGGGATTGTAGAAAAGGATGTTTGCACTGATATCCTATTCAAGCTGCTACTGCACATCAAAATCTTTAATTAGATCATCAAATTTTAACGTTGGGTTTATTCGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62841 True 1072 lncRNA 0.34 1 26527269 26528340

Neighbor

gene id symbol gene type direction distance location
wdr11 wdr11,LOC102787883 coding downstream 59888 26366178 ~ 26467381 (-)
LOC117596837 NA coding downstream 176118 26350129 ~ 26351151 (-)
tmem63ba LOC108263178,LOC103024235,LOC107733349,LOC107655531,LOC107679181 coding downstream 416860 26076592 ~ 26110409 (-)
LOC113541884 s39a9 coding downstream 453515 26066974 ~ 26073754 (-)
LOC113542170 fbxo5,mtrf1l,LOC106904956 coding downstream 515489 26001430 ~ 26011780 (-)
plpp4 plpp4 coding upstream 666 26529006 ~ 26620986 (-)
lhb LOC100304481,LOC108425477 coding upstream 100910 26629250 ~ 26629878 (-)
arfgef3 arfgef3,LOC107751324,LOC107688785 coding upstream 111209 26639549 ~ 26668018 (-)
elovl5 elovl5 coding upstream 158785 26687125 ~ 26706755 (-)
gclc gclc,LOC107664701,LOC107712340 coding upstream 180179 26708519 ~ 26719590 (-)
LOC113542010 NA non-coding downstream 21025 26505767 ~ 26506244 (-)
G53065 NA non-coding downstream 161911 26365138 ~ 26365358 (-)
G53051 NA non-coding downstream 171473 26286924 ~ 26355796 (-)
G53046 NA non-coding downstream 238336 26253345 ~ 26288933 (-)
G53178 NA non-coding upstream 6467 26534807 ~ 26535023 (-)
G53179 NA non-coding upstream 6743 26535083 ~ 26535294 (-)
G53181 NA non-coding upstream 11189 26539529 ~ 26539796 (-)
G53182 NA non-coding upstream 14624 26542964 ~ 26543222 (-)
G53183 NA non-coding upstream 18956 26547296 ~ 26547509 (-)
LOC113542183 NA other downstream 617150 25910018 ~ 25910119 (-)
herc4 herc4,LOC107689351 other downstream 1791381 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 1875422 24451986 ~ 24651847 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other downstream 2394786 24108351 ~ 24132483 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other downstream 2487169 24016896 ~ 24040100 (-)
dst dst other upstream 529557 27057897 ~ 27195955 (-)
zgc:163080 tmem14a other upstream 1009429 27537769 ~ 27541331 (-)
G54269 NA other upstream 1904880 28433220 ~ 28435411 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 3350955 29879295 ~ 30111161 (-)
G55209 LOC108263435 other upstream 3583491 30111831 ~ 30122822 (-)

Expression


Co-expression Network