G53178


Basic Information

Item Value
gene id G53178
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26534807 ~ 26535023 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU62844
GGACCTTTTGCGTGTGAGGTGAATgtgataaccactacactacactacagaaacaatGTTACGGGATGGTATACcttttctctcccctgtcaaccACATCGACAATAGCCAATTGTGCATAAAtgcgagctcatgtatgtgggaGAGGGTGGATAGCACGTTCCTCTGAGTATGTTACGcagccctgtgatgcagcatgagcagcagttcccTCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62844 True 217 lncRNA 0.49 1 26534807 26535023

Neighbor

gene id symbol gene type direction distance location
wdr11 wdr11,LOC102787883 coding downstream 67426 26366178 ~ 26467381 (-)
LOC117596837 NA coding downstream 183656 26350129 ~ 26351151 (-)
tmem63ba LOC108263178,LOC103024235,LOC107733349,LOC107655531,LOC107679181 coding downstream 424398 26076592 ~ 26110409 (-)
LOC113541884 s39a9 coding downstream 461053 26066974 ~ 26073754 (-)
LOC113542170 fbxo5,mtrf1l,LOC106904956 coding downstream 523027 26001430 ~ 26011780 (-)
lhb LOC100304481,LOC108425477 coding upstream 94227 26629250 ~ 26629878 (-)
arfgef3 arfgef3,LOC107751324,LOC107688785 coding upstream 104526 26639549 ~ 26668018 (-)
elovl5 elovl5 coding upstream 152102 26687125 ~ 26706755 (-)
gclc gclc,LOC107664701,LOC107712340 coding upstream 173496 26708519 ~ 26719590 (-)
klhl31 klhl31,LOC107664702,LOC107597701,LOC107688788 coding upstream 185796 26720819 ~ 26725438 (-)
G53175 NA non-coding downstream 6467 26527269 ~ 26528340 (-)
LOC113542010 NA non-coding downstream 28563 26505767 ~ 26506244 (-)
G53065 NA non-coding downstream 169449 26365138 ~ 26365358 (-)
G53051 NA non-coding downstream 179011 26286924 ~ 26355796 (-)
G53048 fgfr2 non-coding downstream 258715 26273916 ~ 26276092 (-)
G53179 NA non-coding upstream 60 26535083 ~ 26535294 (-)
G53181 NA non-coding upstream 4506 26539529 ~ 26539796 (-)
G53182 NA non-coding upstream 7941 26542964 ~ 26543222 (-)
G53183 NA non-coding upstream 12273 26547296 ~ 26547509 (-)
G53210 NA non-coding upstream 133590 26668613 ~ 26668821 (-)
LOC113542183 NA other downstream 624688 25910018 ~ 25910119 (-)
herc4 herc4,LOC107689351 other downstream 1798919 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 1882960 24451986 ~ 24651847 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other downstream 2402324 24108351 ~ 24132483 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other downstream 2494707 24016896 ~ 24040100 (-)
dst dst other upstream 522874 27057897 ~ 27195955 (-)
zgc:163080 tmem14a other upstream 1002746 27537769 ~ 27541331 (-)
G54269 NA other upstream 1898197 28433220 ~ 28435411 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 3344272 29879295 ~ 30111161 (-)
G55209 LOC108263435 other upstream 3576808 30111831 ~ 30122822 (-)

Expression


Co-expression Network