G53210


Basic Information

Item Value
gene id G53210
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047597.1
NCBI id CM018543.1
chromosome length 33776708
location 26668613 ~ 26668821 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU62877
AACGTTTGtggtgctggaaaaaaaaaatttcctcatagaatttgtaatggttttattgGTTATAATGGGacttgtattggttttaatggaaactctaatggtccctgtgggtctctactggtaatttgttaccttctattggtggcatgttatgtctagtggataccattaaggaccagtgatggtaatggttttaatggttataatgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU62877 True 209 lncRNA 0.35 1 26668613 26668821

Neighbor

gene id symbol gene type direction distance location
arfgef3 arfgef3,LOC107751324,LOC107688785 coding downstream 595 26639549 ~ 26668018 (-)
lhb LOC100304481,LOC108425477 coding downstream 38735 26629250 ~ 26629878 (-)
plpp4 plpp4 coding downstream 47627 26529006 ~ 26620986 (-)
wdr11 wdr11,LOC102787883 coding downstream 201232 26366178 ~ 26467381 (-)
LOC117596837 NA coding downstream 317462 26350129 ~ 26351151 (-)
elovl5 elovl5 coding upstream 18304 26687125 ~ 26706755 (-)
gclc gclc,LOC107664701,LOC107712340 coding upstream 39698 26708519 ~ 26719590 (-)
klhl31 klhl31,LOC107664702,LOC107597701,LOC107688788 coding upstream 51998 26720819 ~ 26725438 (-)
bmp5 bmp5,LOC107712332 coding upstream 290283 26959104 ~ 26969207 (-)
col21a1 col21a1,LOC108263596,LOC107681042,LOC107565055 coding upstream 306904 26975725 ~ 27025890 (-)
G53183 NA non-coding downstream 121104 26547296 ~ 26547509 (-)
G53182 NA non-coding downstream 125391 26542964 ~ 26543222 (-)
G53181 NA non-coding downstream 128817 26539529 ~ 26539796 (-)
G53179 NA non-coding downstream 133319 26535083 ~ 26535294 (-)
G53178 NA non-coding downstream 133590 26534807 ~ 26535023 (-)
G53204 NA non-coding upstream 38881 26707702 ~ 26708397 (-)
G53216 NA non-coding upstream 51255 26720076 ~ 26720660 (-)
LOC113542110 NA non-coding upstream 69722 26738543 ~ 26741519 (-)
G53250 NA non-coding upstream 129858 26798679 ~ 26799608 (-)
G53761 NA non-coding upstream 198837 26867658 ~ 26867877 (-)
LOC113542183 NA other downstream 758494 25910018 ~ 25910119 (-)
herc4 herc4,LOC107689351 other downstream 1932725 24661985 ~ 24735888 (-)
lyst lyst,LOC107569426 other downstream 2016766 24451986 ~ 24651847 (-)
LOC113545393 ccdc85a,LOC107716311,LOC107585341 other downstream 2536130 24108351 ~ 24132483 (-)
mlh1 mlh1,LOC104940895,LOC107676366,LOC104940890 other downstream 2628513 24016896 ~ 24040100 (-)
dst dst other upstream 389076 27057897 ~ 27195955 (-)
zgc:163080 tmem14a other upstream 868948 27537769 ~ 27541331 (-)
G54269 NA other upstream 1764399 28433220 ~ 28435411 (-)
cdh23 cdh23,LOC107679169,LOC107676383,LOC106579432,LOC107586104,LOC107549130 other upstream 3210474 29879295 ~ 30111161 (-)
G55209 LOC108263435 other upstream 3443010 30111831 ~ 30122822 (-)

Expression


Co-expression Network